prot_S-dermatodea_contig11020.676.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11020.676.1
Unique Nameprot_S-dermatodea_contig11020.676.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length117
Homology
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BLAST of mRNA_S-dermatodea_contig11020.676.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.240e-25
Identity = 70/152 (46.05%), Postives = 82/152 (53.95%), Query Frame = 0 
Query:    1 CRRLSEVAGAHQHAADNVLALLSTGRRDGSKAGYLRELLVSCPRNSTRAAFESLATDAV-------------------------------------------------ARADPEGEQAASISRAMLGLLDEETYGAARGMSPGGLTHVAAVV 103
            C+RLS++A AHQHAADNVLALL+ GRR+GS AGYLRELLVSCPR STR AFE LA DAV                                                 A      +Q  ++SR +L LL +E+YG+ARG S GGL HVAAVV
Sbjct: 2496 CKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRTSTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAPASVAVVDQQTLALSRVLLDLLADESYGSARGASLGGLAHVAAVV 2647
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BLAST of mRNA_S-dermatodea_contig11020.676.1 vs. uniprot
Match: D8LU89_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU89_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.050e-23
Identity = 65/146 (44.52%), Postives = 78/146 (53.42%), Query Frame = 0 
Query:    1 CRRLSEVAGAHQHAADNVLALLSTGRRDGSKAGYLRELLVSCPRNSTRAAFESLATDAV-------------------------------------------------ARADPEGEQAASISRAMLGLLDEETYGAARGMSPGGLT 97
            C+RLS++A AHQHAADNVLALL+ GRR+GS AGYLRELLVSCPR STR AFE LA DAV                                                 A      +Q +++SR +L LL +E+YG+ARG S GGLT
Sbjct:   99 CKRLSQLARAHQHAADNVLALLAVGRRNGSNAGYLRELLVSCPRASTRLAFEHLAVDAVEASSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVAVAPASVAVVDQQTSALSRVLLDLLADESYGSARGGSLGGLT 244
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11020.676.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTV6_9PHAE1.240e-2546.05USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LU89_ECTSI1.050e-2344.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 94..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11020contigS-dermatodea_contig11020:5161..6079 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11020.676.1mRNA_S-dermatodea_contig11020.676.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11020 5161..6079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11020.676.1 ID=prot_S-dermatodea_contig11020.676.1|Name=mRNA_S-dermatodea_contig11020.676.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
CRRLSEVAGAHQHAADNVLALLSTGRRDGSKAGYLRELLVSCPRNSTRAA
FESLATDAVARADPEGEQAASISRAMLGLLDEETYGAARGMSPGGLTHVA
AVVAAAAAAGGSLSALL
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