mRNA_S-dermatodea_contig11020.674.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.500e-39 Identity = 83/119 (69.75%), Postives = 91/119 (76.47%), Query Frame = 1
Query: 127 KTGYRLKGIVAHQGTADRGHYYSLIRVDGNRWLEFNDRRVTPYDPANIPRDCFGGGVAP-EPGAPDASGAGAL-----HETNAYLLLYERAADESADHHRTLD-PSTAVVPPSATSWRE 462
+T YRLKGIVAHQGTAD GHYYSLIR G+RWLEFNDRRVTPYDPANIPRDCFGG + P E GA DAS HET+AYLLLYE+ A + H+R LD PST VPPS+TSWRE
Sbjct: 2147 RTEYRLKGIVAHQGTADHGHYYSLIRASGDRWLEFNDRRVTPYDPANIPRDCFGGALTPQEGGALDASAXXXXXXXXXHETSAYLLLYEQTAGSTDRHNRALDHPST--VPPSSTSWRE 2263
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI) HSP 1 Score: 131 bits (330), Expect = 6.900e-31 Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = 1
Query: 127 KTGYRLKGIVAHQGTADRGHYYSLIRVDGNRWLEFNDRRVTPYDPANIPRDCFGGGVAPEPG-APDAS----GAGALHETNAYLL 366
+T YRLKGIVAHQGTAD GHYYSLIR G+RWLEFNDRRVTPYDPANIPRDCFGG + P+ G A DAS G G+LHET+AYLL
Sbjct: 3124 RTEYRLKGIVAHQGTADHGHYYSLIRAGGDRWLEFNDRRVTPYDPANIPRDCFGGALTPQEGRALDASAAGGGGGSLHETSAYLL 3208
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Match: A0A835YPA6_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPA6_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 2.810e-18 Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 136 YRLKGIVAHQGTADRGHYYSLIRVDGNRWLEFNDRRVTPYDPANIPRDCFGG 291
YRLKG+VAH GTAD GHYYS IRV WLEFNDR VTP++ A IP++CFGG
Sbjct: 2 YRLKGVVAHVGTADSGHYYSFIRVANGSWLEFNDRVVTPFNEALIPKECFGG 53
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Match: A0A7S3YZF3_9EUKA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YZF3_9EUKA) HSP 1 Score: 90.5 bits (223), Expect = 6.000e-17 Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 136 YRLKGIVAHQGTADRGHYYSLIRVDG-NRWLEFNDRRVTPYDPANIPRDCFGGG-----VAPEPGAPDASGAGALHETNAYLLLYERAA 384
YRLKG+V H G A GHYYS IRV N+W EFND+++TP+DP+ IP +CFGG P+ G S +H NAYLL YER A
Sbjct: 389 YRLKGVVVHTGMASSGHYYSFIRVGSDNKWAEFNDKKITPFDPSRIPAECFGGSREVMRTDPKTGNKVKSQVDIIH--NAYLLFYERIA 475
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Match: A0A7S3HCD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCD8_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.930e-15 Identity = 45/86 (52.33%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 136 YRLKGIVAHQGTADRGHYYSLIR-----VDGNRWLEFNDRRVTPYDPANIPRDCFGGGVAPEPGAPDASGAGALHETNAYLLLYER 378
Y LKGIVAH G DRGHYYS IR G W EFNDR V P+ P IP +CFGG E + S E NAYLL+YER
Sbjct: 37 YALKGIVAHVGAIDRGHYYSFIRNPDGEAAGGVWQEFNDRNVLPFSPEAIPLECFGG--KEEYVNSNGSPVVRARENNAYLLVYER 120
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Match: A0E2T1_PARTE (Uncharacterized protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0E2T1_PARTE) HSP 1 Score: 79.3 bits (194), Expect = 5.930e-13 Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query: 136 YRLKGIVAHQGTADRGHYYSLIRVDGNRWLEFNDRRVTPYDPANIPRDCFGGGVAPEPGAPDASGAGALHETNAYLLLYERAADESAD 399
Y+LKG+V H+GTA GHYYSLI +WL+FND + +D +P +C+GG + SG+ TNAY+L+YER E +
Sbjct: 1909 YKLKGVVVHKGTAQYGHYYSLINTKDEKWLKFNDSVIEDFDVKRLPHECYGGKDTEDSQDFQESGS----STNAYILVYERIQKEQVE 1992
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Match: G5AEF1_PHYSP (USP domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=G5AEF1_PHYSP) HSP 1 Score: 77.8 bits (190), Expect = 1.950e-12 Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 1
Query: 136 YRLKGIVAHQGTADRGHYYSLIRV-----DGNRWLEFNDRRVTPYDPANIPRDCFGG------------GVAPEPGAPDASGAGALHETNAYLLLYERAADE 390
Y L G V H GTA+ GHYYS +R D N+W EFND VTP+DPA IP +CFGG G +PE G+P + + ++++L Y R + E
Sbjct: 1885 YELVGTVVHLGTANSGHYYSFLRDQQVPRDKNQWYEFNDTFVTPFDPAQIPEECFGGEDKTRARQGSASGSSPEEGSPMPT---KMKNRSSFMLFYARVSPE 1983
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Match: Q22E47_TETTS (Ubiquitin carboxy-terminal hydrolase n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22E47_TETTS) HSP 1 Score: 75.5 bits (184), Expect = 1.170e-11 Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 136 YRLKGIVAHQGTADRGHYYSLIRVDGNRWLEFNDRRVTPYDPANIPRDCFGG--GVAPEPGAPDASGAGALHETN---AYLLLYER 378
Y LKG+V HQGT+D GHYYSLI+ +WLEFND V P+D ++P + FGG + G + + TN AYLL YER
Sbjct: 1846 YNLKGVVIHQGTSDSGHYYSLIKQQDEKWLEFNDTVVRPFDINDLPSEAFGGESDLQFNNGNQSMNLNNKMQNTNNKNAYLLFYER 1931
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Match: A0CID2_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CID2_PARTE) HSP 1 Score: 75.5 bits (184), Expect = 1.180e-11 Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 136 YRLKGIVAHQGTADRGHYYSLIRVDGNRWLEFNDRRVTPYDPANIPRDCFGGGVAPEPGAPDASGAGALHETNAYLLLYERAADESAD 399
Y+LKG+V HQGTA+ GHYYSLI ++WL+FND + +D + +CFGG + G + TNAY+L+YER E+ +
Sbjct: 1887 YKLKGVVVHQGTAECGHYYSLINTMDDKWLKFNDSVIEEFDINLLSYECFGGKQSEI-----RQGFQPMGSTNAYILVYERTQKETIE 1969
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Match: F0ZN32_DICPU (USP domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZN32_DICPU) HSP 1 Score: 75.5 bits (184), Expect = 1.180e-11 Identity = 34/56 (60.71%), Postives = 36/56 (64.29%), Query Frame = 1
Query: 124 NKTGYRLKGIVAHQGTADRGHYYSLIRVDGNRWLEFNDRRVTPYDPANIPRDCFGG 291
N+ Y L GIV HQGTAD GHY SLI+ W E ND V PYDP IP DCFGG
Sbjct: 2349 NEYKYTLSGIVLHQGTADSGHYISLIKDTNGSWFELNDTLVLPYDPNRIPIDCFGG 2404 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11020.674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11020.674.1 >prot_S-dermatodea_contig11020.674.1 ID=prot_S-dermatodea_contig11020.674.1|Name=mRNA_S-dermatodea_contig11020.674.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=269bp PSIVEYGPDDRREDLAGGGGKAVGASAAVDKLSVGAGARGLNKTGYRLKGback to top mRNA from alignment at S-dermatodea_contig11020:1296..3267+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11020.674.1 ID=mRNA_S-dermatodea_contig11020.674.1|Name=mRNA_S-dermatodea_contig11020.674.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1972bp|location=Sequence derived from alignment at S-dermatodea_contig11020:1296..3267+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11020:1296..3267+ >mRNA_S-dermatodea_contig11020.674.1 ID=mRNA_S-dermatodea_contig11020.674.1|Name=mRNA_S-dermatodea_contig11020.674.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at S-dermatodea_contig11020:1296..3267+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |