mRNA_S-dermatodea_contig11005.667.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11005.667.1
Unique NamemRNA_S-dermatodea_contig11005.667.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11005.667.1 vs. uniprot
Match: D7FK21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK21_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.780e-38
Identity = 93/143 (65.03%), Postives = 109/143 (76.22%), Query Frame = 1 
Query:    7 IKKDVMEEFDKGARVMDIQISNIISRGRGNFTRSTGPLSETTPFPAALAAQFADLAEDEAAFYEDLGXXXXXXXXXXXXXXXXGGLSDEEVTALLDACGKGLKHVVCLSIGSSTGXXXXXXXXXXXX---DEKGFPGESAAEQ 426
            IKK +MEEFDK ARVMDI+++NII+RGR NFT+ TGPL++ T FPA++AA+FA LAEDEAAFYE+LG                 GLSDEEV  LLDACGK LKHVVCLS+G +  XXXXXXXXXXXX   ++KGFPGES AEQ
Sbjct:  182 IKKKMMEEFDKEARVMDIKVANIIARGRSNFTQFTGPLTDQTAFPASVAAEFAYLAEDEAAFYEELGGGGGEDAAKGE------GLSDEEVVGLLDACGKSLKHVVCLSVGGAXXXXXXXXXXXXXXXXAEDKGFPGESTAEQ 318
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BLAST of mRNA_S-dermatodea_contig11005.667.1 vs. uniprot
Match: A0A6H5KAR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAR2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.750e-21
Identity = 47/67 (70.15%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    7 IKKDVMEEFDKGARVMDIQISNIISRGRGNFTRSTGPLSETTPFPAALAAQFADLAEDEAAFYEDLG 207
            IKK +MEEFDK ARVMDI+++NII+RG+ NFT+ TGPL++ T FPA++AA+FA LAEDEAAFYE+LG
Sbjct:  269 IKKRMMEEFDKEARVMDIKVANIIARGKSNFTQFTGPLTDQTAFPASVAAEFAYLAEDEAAFYEELG 335
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11005.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK21_ECTSI1.780e-3865.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAR2_9PHAE1.750e-2170.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11005contigS-dermatodea_contig11005:4920..7692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue3.2e-31
Seed eggNOG ortholog2880.D7FK21
EggNOG OGs2E3JX@1,2SAMM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size426
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11005.667.1prot_S-dermatodea_contig11005.667.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11005 4920..7671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924183.6247134-CDS-S-dermatodea_contig11005:4919..51371622924183.6247134-CDS-S-dermatodea_contig11005:4919..5137Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11005 4920..5137 -
1694079075.5373485-CDS-S-dermatodea_contig11005:4919..51371694079075.5373485-CDS-S-dermatodea_contig11005:4919..5137Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11005 4920..5137 -
1622924183.6341932-CDS-S-dermatodea_contig11005:7484..76711622924183.6341932-CDS-S-dermatodea_contig11005:7484..7671Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11005 7485..7671 -
1694079075.5492465-CDS-S-dermatodea_contig11005:7484..76711694079075.5492465-CDS-S-dermatodea_contig11005:7484..7671Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11005 7485..7671 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924183.642519-UTR-S-dermatodea_contig11005:7671..76921622924183.642519-UTR-S-dermatodea_contig11005:7671..7692Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11005 7672..7692 -
1694079075.558912-UTR-S-dermatodea_contig11005:7671..76921694079075.558912-UTR-S-dermatodea_contig11005:7671..7692Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11005 7672..7692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11005.667.1

>prot_S-dermatodea_contig11005.667.1 ID=prot_S-dermatodea_contig11005.667.1|Name=mRNA_S-dermatodea_contig11005.667.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=135bp
MEEFDKGARVMDIQISNIISRGRGNFTRSTGPLSETTPFPAALAAQFADL
AEDEAAFYEDLGGGGGGGGGGDGGAKVGGGLSDEEVTALLDACGKGLKHV
VCLSIGSSTGGGGGLFGGGGGGDEKGFPGESAAEQ
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mRNA from alignment at S-dermatodea_contig11005:4920..7692-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11005.667.1 ID=mRNA_S-dermatodea_contig11005.667.1|Name=mRNA_S-dermatodea_contig11005.667.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2773bp|location=Sequence derived from alignment at S-dermatodea_contig11005:4920..7692- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAACAGATAAAAAAGGATGTGATGGAGGAGTTCGACAAGGGTGCGCGGGT
AATGGACATCCAGATCTCCAACATCATATCGCGCGGTAGGGGGAACTTCA
CCCGGTCCACCGGCCCGCTTTCGGAGACCACCCCTTTCCCCGCCGCCTTG
GCCGCTCAGTTCGCCGACCTGGCCGAAGATGAGGCGGCGTTCTACGAAGA
TTTAGGCGGTGAGTAGGCGGCAGGGGGGGGGGGGGGGGGGGGGGGTTGTT
TTTTTATTTGTTTTGTGGTTGTACCTTTGTATCCNNNNNNNNNNCCTTTC
CCCGCCGCTTTGGCCGCTCAGTTGCCCGCCCGGGCGGAAGAGGGGGGGGT
GTTTTAGGAAGTTTTGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGG
GGCTTATGTTTTGCATGCCTTAGCTGTTAGACCATTGATCACGCGTCCTC
GAGAGGACGGAGAATTGTTCCACAGGATGGATCTATCGCCGATAGCCGCT
TGCTCCTTCCTTCTCTGCCTAAGGTGGCCCAAAACGTTTTTACTATCCTG
TCTACATCACTTGTCGCCTTCTCAGGCCATTTCTTATCCCCCAGTGTGGC
TACCGCCTTCGTCTGGTTGTTCCATGCTTCAAAAGTCGCTGTCACAGCCT
TCAATTTTCCCAGCTCAGCCATCACGGGGGGGGGGGGGGGGGGGGAATTG
GGTTAATCAACTTGGTGTTGGATGGGGGCAAAACACCCGGGCCCCCAGAA
ATGGCGGGAGGAGGCAAAATGNNNNNNNNNNGGGTTTTTCTTCGGGTTGT
GGTGGGAGGGAGGGGGGGTGGGGGCTGGTTTGTTTTTGGGGGGTCCTGTG
GGGGGGGGGGGGGGGGGGGGGTACTTGTGTTAAGCACATGTCGTATCGAT
ACGGACATAGACCACGCGTCCCAGCAAATGCCGGGACGGAGCGATATGCT
GGGTCTTTGCCGGTCTGGCTGCGTTTCACAAGGATACCATGATACCAGCT
GCTAGCCATCATCCTCGCGTTTGCGACGGCAAACGATGTGCCATGGGTGG
ATTCGACATACCGGGCAACCAAATGTTATGTTGCACGTGCGTTAGGCGTG
AAACTACTCCAAGTACCGCAAAGAGACTTTGATATCCGTGCCATCGCAAA
AGCGCTGCACGGTGGACAAAGACACTTGTACCGTACCCATATGACAACAT
ACATGGCATGAAACCATAGCTTTATACTCAACGTAGGCCTCCATAGGTGC
AGCTTGGACCACCTTCCCTTTAAAAAAGGTGGGACCCAGACGCTCGCTCC
ATGTCCTCGTGAAACAACGTTTTTTTGGTTGTTCTCAAATCTTGCATGTC
TTCCCTGTTAGGCCGTTGACCACGCGTCCGCCCTCGGGACGAGGACGGAG
GGAGCATTGTTCCCGCAGAATCGACCCATCGCAGGTGGATGGCCAGTCGT
TCCTTCCTTCTCTGCCAAAGATGGTGCAACTACTGCTGTAGTACACAAAA
TTGACCGTAATGACACGACCATCATTTCCCCAACTACTGTTCCGACCATC
AACACTCCCGAACAAACAGAGTAACGCTCATGAACCACGACGAAAAACCC
CCACCAGGTCTGGCCTATGTATATCGGACAGCATCTTATTAATTAACGCA
ACAATGACCGATTGGGTATATTGATTTTAGACAAGGATGCTGTCTGATGT
CAAACAACTTGATGTTTGTGCTGACGATTTTTTTTTCATAAAAGCGAAAA
CAAAGCAGCGGCACGCACAGTAGCTCGACCGCGTTCGACCTAGGTGTCGC
GTTCCGTCGGCATATCGTCCTGCCAACGCACACCTCACACGGGCGTAGCC
GTGGCTACCCACTAGTAAACCATGAATAAATTAATACCTAATCATTCCGG
GCTCTCCCTCGTGTCTCTTCAAATTTGAAACAAATTCTGTGACTAAGTTG
GACCTACTAACTCATGGTCCTCCGAAACACCACCTACCACCTATCCCCCT
CCCCCCTTACCTCCTACCCCCCTCCCCCTCCCTAACGACTACAACTCCAA
GTGACACCACCCCCGGAGGGCGCCCAGCGGCAGGACATCATGACCCCCGA
GGAGCGCAACCAGATAGAGGCCGAGCTCCGCACGCTCTCCCCGGACGACG
TGGTCAAGGCGGCGGCGGCGCAAGCCGCCGCCCTGGCCAAGAAGACCGCC
TCGGAGAAAGCCGCGGCCGCGCGGCGCGCGGCGGATGCCGCGGGCAGCGT
GGTCGTGGTCGGGGCGGGCGAGGAGTCCGCCGACAGCGATGGTGAGGCCG
ACGGCGCCGGCAGCCTGGGCGCGCGGGTGCTCGCTCTGTTCGAGACGGAG
GCGGGAGAGATGGGGGGCAAGGGGGTCGCCAGGGTAACCGCCGCGAGCGG
GGTTTCCTTGGCGGATGCGAAGGCGTTGGGCGACCGGGTGAAGGGCGTGC
TGGATGGGGTGAAGACCCTGGTGGTATTACCGGCGGACGGGGGTAGCAGC
AAAAAAAAGGCTGGGGGAGGAGGGGGAGGGGGAGGGTTTGGTGGGCTGTT
CGGAGGCGGTGGTGGTGGCGGGGGCGGCGGTGATGGTGGTGCGAAGGTGG
GCGGCGGACTGTCAGACGAGGAGGTTACCGCGCTGCTGGATGCCTGCGGG
AAGGGGTTGAAGCACGTCGTGTGCCTCTCTATCGGGAGTTCCACCGGAGG
AGGCGGGGGTCTGTTTGGGGGGGGCGGGGGGGGCGACGAGAAGGGCTTCC
CCGGGGAGAGCGCGGCGGAGCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11005:4920..7692-

>mRNA_S-dermatodea_contig11005.667.1 ID=mRNA_S-dermatodea_contig11005.667.1|Name=mRNA_S-dermatodea_contig11005.667.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at S-dermatodea_contig11005:4920..7692- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGAGTTCGACAAGGGTGCGCGGGTAATGGACATCCAGATCTCCAA
CATCATATCGCGCGGTAGGGGGAACTTCACCCGGTCCACCGGCCCGCTTT
CGGAGACCACCCCTTTCCCCGCCGCCTTGGCCGCTCAGTTCGCCGACCTG
GCCGAAGATGAGGCGGCGTTCTACGAAGATTTAGGCGATGGAGGAGTTCG
ACAAGGGTGCGCGGGTAATGGACATCCAGATCTCCAACATCATATCGCGC
GGTAGGGGGAACTTCACCCGGTCCACCGGCCCGCTTTCGGAGACCACCCC
TTTCCCCGCCGCCTTGGCCGCTCAGTTCGCCGACCTGGCCGAAGATGAGG
CGGCGTTCTACGAAGATTTAGGCGGCGGTGGTGGTGGCGGGGGCGGCGGT
GATGGTGGTGCGAAGGTGGGCGGCGGACTGTCAGACGAGGAGGTTACCGC
GCTGCTGGATGCCTGCGGGAAGGGGTTGAAGCACGTCGTGTGCCTCTCTA
TCGGGAGTTCCACCGGAGGAGGCGGGGGTCTGTTTGGGGGGGGCGGGGGG
GGCGACGAGAAGGGCTTCCCCGGGGAGAGCGCGGCGGAGCAGGCGGTGGT
GGTGGCGGGGGCGGCGGTGATGGTGGTGCGAAGGTGGGCGGCGGACTGTC
AGACGAGGAGGTTACCGCGCTGCTGGATGCCTGCGGGAAGGGGTTGAAGC
ACGTCGTGTGCCTCTCTATCGGGAGTTCCACCGGAGGAGGCGGGGGTCTG
TTTGGGGGGGGCGGGGGGGGCGACGAGAAGGGCTTCCCCGGGGAGAGCGC
GGCGGAGCAG
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