prot_S-dermatodea_contig1100.662.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1100.662.1
Unique Nameprot_S-dermatodea_contig1100.662.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length56
Homology
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BLAST of mRNA_S-dermatodea_contig1100.662.1 vs. uniprot
Match: A0A6H5KTL2_9PHAE (SRP54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.330e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0 
Query:    3 QALLQADIGATTSYQIIEDLRKTAKAEDRLLEPDDIKAVLRATLIQVL 50
            +ALLQAD+GATTS+QIIEDLR TAKAEDR LEPDDIK+VLRATLIQVL
Sbjct:   78 EALLQADLGATTSFQIIEDLRNTAKAEDRRLEPDDIKSVLRATLIQVL 125
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BLAST of mRNA_S-dermatodea_contig1100.662.1 vs. uniprot
Match: D7FVJ7_ECTSI (PFtsY, plastid signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ7_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.020e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0 
Query:    3 QALLQADIGATTSYQIIEDLRKTAKAEDRLLEPDDIKAVLRATLIQVL 50
            +ALLQAD+GATTS+QIIEDLR TAKAEDR LEPDDIK+VLRATLIQVL
Sbjct:  175 EALLQADLGATTSFQIIEDLRNTAKAEDRRLEPDDIKSVLRATLIQVL 222
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BLAST of mRNA_S-dermatodea_contig1100.662.1 vs. uniprot
Match: A0A7S2BL25_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BL25_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.320e-5
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0 
Query:    3 QALLQADIGATTSYQIIEDLRKTAKAEDRLLEPDDIKAVLRATLIQVLYPEG 54
            + L+ ADIG TT+ +I+ DLR+TAK +DRL +P+DIK+VLR  L+  L   G
Sbjct:  170 ELLMMADIGGTTTDEIMTDLRRTAK-DDRL-DPEDIKSVLRGRLVATLDGRG 219
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1100.662.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KTL2_9PHAE1.330e-1787.50SRP54 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FVJ7_ECTSI2.020e-1787.50PFtsY, plastid signal recognition particle recepto... [more]
A0A7S2BL25_9STRA1.320e-551.92Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013822Signal recognition particle SRP54, helical bundlePFAMPF02881SRP54_Ncoord: 3..45
e-value: 5.7E-6
score: 26.5
IPR042101Signal recognition particle SRP54, N-terminal domain superfamilyGENE3D1.20.120.140coord: 1..53
e-value: 1.3E-9
score: 39.9
IPR036225SRP/SRP receptor, N-terminalSUPERFAMILY47364Domain of the SRP/SRP receptor G-proteinscoord: 3..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1100contigS-dermatodea_contig1100:2772..2939 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1100.662.1mRNA_S-dermatodea_contig1100.662.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1100 2772..2939 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1100.662.1 ID=prot_S-dermatodea_contig1100.662.1|Name=mRNA_S-dermatodea_contig1100.662.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
MGQALLQADIGATTSYQIIEDLRKTAKAEDRLLEPDDIKAVLRATLIQVL
YPEGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013822Signal_recog_particl_SRP54_hlx
IPR042101SRP54_N_sf
IPR036225SRP/SRP_N