mRNA_S-dermatodea_contig1100.662.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1100.662.1
Unique NamemRNA_S-dermatodea_contig1100.662.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1100.662.1 vs. uniprot
Match: A0A6H5KTL2_9PHAE (SRP54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.330e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    7 QALLQADIGATTSYQIIEDLRKTAKAEDRLLEPDDIKAVLRATLIQVL 150
            +ALLQAD+GATTS+QIIEDLR TAKAEDR LEPDDIK+VLRATLIQVL
Sbjct:   78 EALLQADLGATTSFQIIEDLRNTAKAEDRRLEPDDIKSVLRATLIQVL 125
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BLAST of mRNA_S-dermatodea_contig1100.662.1 vs. uniprot
Match: D7FVJ7_ECTSI (PFtsY, plastid signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ7_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.020e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    7 QALLQADIGATTSYQIIEDLRKTAKAEDRLLEPDDIKAVLRATLIQVL 150
            +ALLQAD+GATTS+QIIEDLR TAKAEDR LEPDDIK+VLRATLIQVL
Sbjct:  175 EALLQADLGATTSFQIIEDLRNTAKAEDRRLEPDDIKSVLRATLIQVL 222
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BLAST of mRNA_S-dermatodea_contig1100.662.1 vs. uniprot
Match: A0A7S2BL25_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BL25_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.320e-5
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    7 QALLQADIGATTSYQIIEDLRKTAKAEDRLLEPDDIKAVLRATLIQVLYPEG 162
            + L+ ADIG TT+ +I+ DLR+TAK +DRL +P+DIK+VLR  L+  L   G
Sbjct:  170 ELLMMADIGGTTTDEIMTDLRRTAK-DDRL-DPEDIKSVLRGRLVATLDGRG 219
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1100.662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KTL2_9PHAE1.330e-1787.50SRP54 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FVJ7_ECTSI2.020e-1787.50PFtsY, plastid signal recognition particle recepto... [more]
A0A7S2BL25_9STRA1.320e-551.92Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1100contigS-dermatodea_contig1100:2772..2939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue3.3e-14
Seed eggNOG ortholog2880.D7FVJ7
KEGG koko:K03110
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924183.3460631-CDS-S-dermatodea_contig1100:2771..29391622924183.3460631-CDS-S-dermatodea_contig1100:2771..2939Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1100 2772..2939 -
1694079075.3634968-CDS-S-dermatodea_contig1100:2771..29391694079075.3634968-CDS-S-dermatodea_contig1100:2771..2939Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1100 2772..2939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1100.662.1prot_S-dermatodea_contig1100.662.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1100 2772..2939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1100.662.1

>prot_S-dermatodea_contig1100.662.1 ID=prot_S-dermatodea_contig1100.662.1|Name=mRNA_S-dermatodea_contig1100.662.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
MGQALLQADIGATTSYQIIEDLRKTAKAEDRLLEPDDIKAVLRATLIQVL
YPEGR*
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mRNA from alignment at S-dermatodea_contig1100:2772..2939-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1100.662.1 ID=mRNA_S-dermatodea_contig1100.662.1|Name=mRNA_S-dermatodea_contig1100.662.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at S-dermatodea_contig1100:2772..2939- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGTCAGGCGCTGTTGCAAGCGGATATCGGAGCGACGACGTCGTACCA
GATCATCGAGGACCTCAGGAAGACCGCCAAAGCGGAGGACCGACTCCTGG
AGCCCGACGACATCAAGGCCGTGCTGCGGGCGACCCTTATTCAGGTACTG
TACCCCGAGGGACGATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1100:2772..2939-

>mRNA_S-dermatodea_contig1100.662.1 ID=mRNA_S-dermatodea_contig1100.662.1|Name=mRNA_S-dermatodea_contig1100.662.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig1100:2772..2939- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGTCAGGCGCTGTTGCAAGCGGATATCGGAGCGACGACGTCGTACCA
GATCATCGAGGACCTCAGGAAGACCGCCAAAGCGGAGGACCGACTCCTGG
AGCCCGACGACATCAAGGCCGTGCTGCGGGCGACCCTTATTCAGGTACTG
TACCCCGAGGGACGATGAATGGGTCAGGCGCTGTTGCAAGCGGATATCGG
AGCGACGACGTCGTACCAGATCATCGAGGACCTCAGGAAGACCGCCAAAG
CGGAGGACCGACTCCTGGAGCCCGACGACATCAAGGCCGTGCTGCGGGCG
ACCCTTATTCAGGTACTGTACCCCGAGGGACGATGA
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