mRNA_S-dermatodea_contig110.660.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig110.660.1
Unique NamemRNA_S-dermatodea_contig110.660.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig110.660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig110contigS-dermatodea_contig110:37302..41462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size369
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig110.660.1prot_S-dermatodea_contig110.660.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig110 37446..41462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.7942235-UTR-S-dermatodea_contig110:37301..374451622924182.7942235-UTR-S-dermatodea_contig110:37301..37445Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig110 37302..37445 +
1694079074.8769217-UTR-S-dermatodea_contig110:37301..374451694079074.8769217-UTR-S-dermatodea_contig110:37301..37445Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig110 37302..37445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.811188-CDS-S-dermatodea_contig110:37445..375991622924182.811188-CDS-S-dermatodea_contig110:37445..37599Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 37446..37599 +
1694079074.8902874-CDS-S-dermatodea_contig110:37445..375991694079074.8902874-CDS-S-dermatodea_contig110:37445..37599Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 37446..37599 +
1622924182.8200178-CDS-S-dermatodea_contig110:41391..414621622924182.8200178-CDS-S-dermatodea_contig110:41391..41462Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 41392..41462 +
1694079074.9096925-CDS-S-dermatodea_contig110:41391..414621694079074.9096925-CDS-S-dermatodea_contig110:41391..41462Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig110 41392..41462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig110.660.1

>prot_S-dermatodea_contig110.660.1 ID=prot_S-dermatodea_contig110.660.1|Name=mRNA_S-dermatodea_contig110.660.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
MRFVLLLSCLLAALCGSAGFMLPGVARGRACNRSSRATVGGMHLVSRARC
QGLLPTASACPAASGLRMSGGGEEG
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mRNA from alignment at S-dermatodea_contig110:37302..41462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig110.660.1 ID=mRNA_S-dermatodea_contig110.660.1|Name=mRNA_S-dermatodea_contig110.660.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4161bp|location=Sequence derived from alignment at S-dermatodea_contig110:37302..41462+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCGTGTGTTATCATACTAGAGCGGCCTCCTCTCTCCGCCAACCACCTC
GGGCGTACCACCAGGAAGCCTCACACTGGTTTGCAGCTGTAAGACCAGGT
GCCGCACGAGGATTATCTGCAAGTCGAAGCGGAATCCATCGATCATGAGG
TTTGTCCTTCTCCTCTCATGCCTCCTGGCGGCTCTCTGCGGTTCGGCGGG
GTTCATGTTGCCAGGTGTCGCGCGCGGCAGGGCGTGCAACCGCTCTTCGC
GAGCCACCGTGGGTGGGATGCACCTCGTTTCCCGCGCCCGCTGTCAAGGT
GAGCGCTTGTGTGTGTTGTGGTACTAGGAGAGGACTAGCCGTGGGTCTGA
TCGTCTGTTCCCATGTTCACATGCTTCCTACGTTGCATTTTGACATGTAC
TCCTCCAGGATCCTGTCGTTGCAAGCAGCCCGTCGCTGCGCTGTCCGGCT
GTTAAATAGAGCTGGGAGAGTGCAGCGTGTTGCCCGTGTCAGCTGAAGGG
CAACTATTATGACATGTTCAACAGGTACAAATGATATGCACGATAGGGTG
AGGCCTACCATGAAATAATATCGGTAGTTCTTGCTGAATGGTATTACATT
ATGAAAATAGATTACTGCGTTGTCAAGATAGGAGGATATACTTGTACAGT
CAGAAGTTGTAGTAACAGACTTTGAGATGGTCCACATGTATCATAAGCTC
TAGCTCTAGAGATTCGGGACGTACATTTTGATTGATTGATTGATTGATTG
ATTTGCACACGTGATAGCCGATCGACCCGACTTGTGGTCAGCCACGCATA
GATTCAAGGAGAAAACTAACTAACCGTAACTCTACTTCTACTATACACCG
TACCGTCCCTGGTACTTACTATAGGTACAAGAAATAAGAAATAGTCTCAG
ATATAGAAAAAACGCTATTAAAATAGAAGTGAACCCGGACTCAAACAATG
CTCCCTCGCCTCTCCACCTGTCCTTATTGTAATACGGCCAGTTGCAACTC
GGCAGGGACATCAGCATAAGAGTTAGAGCAGGGGAAAAAATCAAATAGGG
AATATAGAGAAGAAGGAAAGAACAGATGACAAAAGGAAAACAGAAGAAAC
ATAAAGGCAGAGAGAGAGAAGCAAGAACCAGGAGAAGAGGAATAGAAGCC
GGCACAAACACACTGAACCAGGGAAAAACAAAACAAAAACAAAGGAAACG
ACTCCAACGCCCTTTCAATTCTACATCGGCGTAGCAACGTCTGATCCGCG
GCGGCGTCTCTTCAGTGGCGGCTGTGAGTGAGTTTGCCGGGTCGTGCGCG
TCTCACTTTTTTCGCTCCCGGTTCTACAGCAACATTTCCCTCCCCCTCCG
CTCGCTTCGCGGCATCTGCGGTTTCCGCTTCGACCTCCCTCTTTGCATGT
CTTTTTTCGGCTTCGGCTTTCACCTTCTCCCTCCACATCCCCATGAACCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCGT
CCACCCCCCCCCCCCCCCCCCCCTCTTCTACCCCACCATACCACACCTGC
GCATTCCGGGCAGCCCCCTCACCCCGAAACTTCCAACCCGAAGGCCTTAA
GGTCGTCCTGCAGACACTGCGCCAAGTTCTTCTCCGGTCTGCCGCGTGGC
ATCCTGATCCCACCAGCCAACTTACCCAGCATCACGCGTCGCGGTAGCCG
CATGTTGTGTGTGCGTACGACATGACCCACCCATAGCAGTCTACGCGTGC
GCATAGTCGTCTCGATGCTCTCACACTCAGTCTTCTCGAGAACGTCTTTG
TAGGACATCACGCGGTATGTCTTCTTGTTGCGGTGCGACCCAAGAATGCG
CAGAAACATCCCGTGGTGGTGCGCAGCTTACCGTAGTGGAGCGGGCGGAG
GGTCCACGTTACGGACCCGTACAGCAGGGTCTCGATCACCTCGGCCTTGA
ACAGCCGAACCTTGATCCCCAGCCTCACTTGGGGTCGGTCGTAGATATTC
TTGCCGTATTTCTTGAAGCAGAACCAGGCGAGCCGGATGCGCCGGTCGAT
CTCGGTGCTTATGTCCGGTATCTCGGTGATACAGCTCCCAAGATAGACAC
ATGTATCTGTCTGGGCGTACCTCTGGCCAGCGGCCTCGATCCGGATCGGA
TCCATCTCTGCTCCCCGGGCGGGCGTGGCCATTGTCTCTGTCTCCTCTTC
CGATACGGTCAGGCCAAAGGCTTTGCACACCTCCACAACCACCGTCATAA
TCTTTTCGAGTCCGTCTGCCAATCGCGAGGCGATGCAGGCATCATCGGCG
TACAGCATGCCCCACACGGCCCGCATATCCTTCGCCATCGCCGTCTCCGG
CCCCACCAGTGTCCGGGCCTCCTCCAGCTGTACAACGTTGGCCAGAATGC
CCGGTTCCTTGCTAAACCGCTGTAGGATTACATGGGAACTATTACTAGAT
TTTATATGTTACTGTATATATATACTATAATACAAGTACAGTCGCTGCTC
GGTGCAGCCAGATGGCCTCCCTGAACACAGAGTAACAAAGATTACAAATT
ACGGCGGTGCAAGGCACTGAAAACTCAAGACGGACGAGGTGGCCTCGATC
TAGTTTTTTATCACGGCGGTGTAAGTAACGGAACCTCCTGCCGTTGTGGC
TGTGCATTTAAGGTGGTGGATTAGTTGCGCACCGGCTTGCGCATGAAGCG
CCCCATGAACGGTGAATGCGTGTGTCCGTGCGACGTGTGTGTGTGTGGTA
TCGCGAGTGGCATGCATTGCGTTGCATCCGATGGCGGCTACGATACTCTG
TACGTAGCCGTGTTTCCGTGGCATACACGCAAGCTTGTTACCGGTTCGTA
TCTGTTTTTCGGCGGCGGCGGCGGCGGCGCAGACAGGACAAGGTTAAAGC
GCATGCAGAGAACCGTGTCATGAGTTGACAGGGTTGGGTCATTTCGACGC
CCGCAGAGATACCGCCAAGTCGGCGTAGGGTTTACAGTATCATAAAGGTA
TCATAGTGCCGCATGTCTTGTCCAGGACAAGCTGGTCCACAGCTTACGCG
CGGCGCGCTGCTTTCGAAAGCGACCGGTGACGGTTCCAAGTGTAATGCAC
GCAGGTTGACGGCCCTCGAGTGACGTATAATAGCAATTCATGTAGTGCTC
GCGCTTTAGGCTAAATAGTCGACGATGACGCGACCTGTCTCAGCTCTCAG
CAGGCTCTGGCAGCGGTGTAATGCCCCTACGGATGGTGCTTGCACTCAAA
TAGCACGAGAGTCGATCGCATGTGCTTCATTAATCTGTTGTGGAGGTTAC
AGATTGTCGACATGTCCATGGTTCCTTATTGCAGGTGTACGTACGTGCTA
GGTTAGAGCGTCCTGCTGATACCGTCATCCTCTGTTCACGAGAAAAATGG
GAAATAGCCAAGAACCGGACGGCGGCAGTTACGAAACCGTCAGGAAGTTT
TTAAGTTAAATGTTGAAGCGGCCGTAGCTCAGGTGAAGAGCCCGGTTCAC
CCTCATTCGTTATCAGCCTCAACCACGACGCATCTACACGGCAAGCAGCA
TGACCCACCATCGTCGACAACCTAAAAAAATCGTGTCACCCGTAGGGGCC
AGCCTTTGCCGGCTCCAACAAACACATCACACGGCGGTAGGTTAGGATAA
GGGGCCGCTATGATACGAAATATGGAAACAATTCATACCGAACACTCGTG
GACCTAACTGCCTGTCCCGCTATTATTTCACGGCAAAACGATCGCATTAG
AATTTTAGCTGCACCATTTTTCCCGGTACGTATACGTCCATTGGCTCCAC
TTATCGCTGCAACAACGGCTGGACTACTGTATCAGATGAATTATATACGA
GAGGAACAACGGCCAACAAACCGTTCAGGTACTATGCCTCGTTAAATAGT
AAGTCTATCGCGTGTTGTTCCCAGTTCGTATCCACTGCATCTACTTTGTA
CACCATGTGCACCGTTCCCACCCTGTAACTCCTGCTTCGTCCCTCTCCTT
GCCTCGAGAAAGGAAGCACCCGCGCACCCCTGCAAGCGGACCTGCCTCTC
TAAACACGCTAGTGCGTTGTCCCTGCTTGCTTGCTGGCAGGCCTATTGCC
AACAGCCTCGGCTTGCCCAGCGGCGTCGGGGTTGCGTATGAGCGGCGGGG
GGGAGGAAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig110:37302..41462+

>mRNA_S-dermatodea_contig110.660.1 ID=mRNA_S-dermatodea_contig110.660.1|Name=mRNA_S-dermatodea_contig110.660.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig110:37302..41462+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGTTTGTCCTTCTCCTCTCATGCCTCCTGGCGGCTCTCTGCGGTTC
GGCGGGGTTCATGTTGCCAGGTGTCGCGCGCGGCAGGGCGTGCAACCGCT
CTTCGCGAGCCACCGTGGGTGGGATGCACCTCGTTTCCCGCGCCCGCTGT
CAAGATGAGGTTTGTCCTTCTCCTCTCATGCCTCCTGGCGGCTCTCTGCG
GTTCGGCGGGGTTCATGTTGCCAGGTGTCGCGCGCGGCAGGGCGTGCAAC
CGCTCTTCGCGAGCCACCGTGGGTGGGATGCACCTCGTTTCCCGCGCCCG
CTGTCAAGGCCTATTGCCAACAGCCTCGGCTTGCCCAGCGGCGTCGGGGT
TGCGTATGAGCGGCGGGGGGGAGGAAGGGGCCTATTGCCAACAGCCTCGG
CTTGCCCAGCGGCGTCGGGGTTGCGTATGAGCGGCGGGGGGGAGGAAGGG
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