mRNA_S-dermatodea_contig10995.649.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10995.649.1
Unique NamemRNA_S-dermatodea_contig10995.649.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.560e-43
Identity = 74/110 (67.27%), Postives = 79/110 (71.82%), Query Frame = 1
Query:    1 EGSAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERR-----------------GGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
            E   WVYPSEQQYYNAIKRKGYKASA DMPSTLAIHNAVNEKGWEMV++WER                     G   APKLLRFTGRP+D SPKAW+K+ LLGY PPFDR
Sbjct:  221 EAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDR 330          
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 5.170e-41
Identity = 78/147 (53.06%), Postives = 83/147 (56.46%), Query Frame = 1
Query:    1 EGSAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWER-------------------------------RGGEG-----------------------DVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
            E   WVYPSEQQYYNAIKRKGYKASA DMPSTLAIHNAVNEKGWEMV++WER                               RGGEG                        VPAPKL RFTGRP+D SPKAW+K+ L GY PPFDR
Sbjct:  207 EAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDR 353          
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.210e-37
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 1
Query:    7 SAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWER-RGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
            + WVYPSEQQY+NA+KRKG++A   D+P  LAIHNAVNE+GW  V++WE  RGG+     PKL  F GRP D+SPKAW KTN+LGY PPFDR
Sbjct:   47 NVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD-----PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDR 133          
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A7S1UN93_9STRA (Holocytochrome c-type synthase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UN93_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.650e-32
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   13 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
            WVYPSEQQ+YNA+KRKG++A  + MP  + IHNAVNE+GW  V  WE   G    P P+L+RF GRPKD+SPKA+L T +LGY PPFDR
Sbjct:  113 WVYPSEQQFYNAMKRKGWEADESTMPLVVRIHNAVNERGWSEVCKWEALHG---CPNPRLVRFLGRPKDISPKAFLNTYILGYRPPFDR 198          
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A4S929_OSTLU (Holocytochrome c-type synthase (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S929_OSTLU)

HSP 1 Score: 112 bits (281), Expect = 4.900e-30
Identity = 56/93 (60.22%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 EGSAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
            E + W YPSE+ +YNA+KRKG+K SA DM   + IHNAVNEK W  V  WERR  E   P PKLL+F GRPKD SPKA    N LGY  PFDR
Sbjct:    1 EEATWRYPSEEMFYNAMKRKGWKPSANDMEHVVKIHNAVNEKAWAHVMAWERRHCER-CPDPKLLKFRGRPKDYSPKAQF-LNFLGYKLPFDR 91          
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.350e-30
Identity = 54/89 (60.67%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   13 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
            WVYPSEQQYYNA+KRKGY  S  D+P+ L IHN VNEKGW  VK+WE   G    P PKL +F G+P  +SPKA L  N++GY  PFDR
Sbjct:  109 WVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSG---FPNPKLKKFMGKPTQLSPKARL-LNMIGYSKPFDR 193          
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A5M6BU68_9TREE (Holocytochrome c-type synthase n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6BU68_9TREE)

HSP 1 Score: 113 bits (283), Expect = 5.320e-29
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 EGSAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
            E   WVYPSEQQ++NA+ RK +K  A DM + + IHNAVNEK WE V  WE   G      PKL+ F G+PK+ +PKAW+KT  LGY PPFDR
Sbjct:  116 EAGNWVYPSEQQFFNAMLRKNHKPKAQDMRTVVPIHNAVNEKAWEEVLRWESPFGSERCGGPKLVSFVGKPKERTPKAWIKT-ALGYTPPFDR 207          
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: A0A3M7KZQ7_AUXPR (Holocytochrome c-type synthase n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KZQ7_AUXPR)

HSP 1 Score: 110 bits (275), Expect = 7.600e-28
Identity = 53/89 (59.55%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   13 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
            W YPSEQ +YNA++RKG+  S  DM + +AIHNAVNE+ W  V+ WE   G    PAP LLRF GRP DVSPKA L  N LGY  PFDR
Sbjct:  110 WTYPSEQMFYNAMRRKGWTPSEEDMTAVVAIHNAVNERAWREVRAWEAAAG---CPAPTLLRFRGRPADVSPKARL-LNALGYRLPFDR 194          
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: B8C628_THAPS (Holocytochrome c-type synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C628_THAPS)

HSP 1 Score: 107 bits (267), Expect = 1.160e-27
Identity = 49/89 (55.06%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   13 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
            W+YPSEQQ+YNA+ RKGYK     +PS L IHNAVNE+ W  V  WE+     D   PKL++F GRPKD+SPKAW  + +L    PFDR
Sbjct:   24 WMYPSEQQFYNAMLRKGYKPPIESIPSVLQIHNAVNERSWLQVCKWEKE--LHDNADPKLVKFVGRPKDLSPKAWWNSRVLMTQEPFDR 110          
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Match: K0SEF6_THAOC (Holocytochrome c-type synthase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SEF6_THAOC)

HSP 1 Score: 110 bits (274), Expect = 1.980e-27
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   13 WVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDWERR-GGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR 279
            W YPSEQQ+YNA+ RKGY+     +PS L IHNAVNE+ W  V+ WER   G GD   P+L +F GRPKD+SP+AW  +N+L    PFDR
Sbjct:  138 WQYPSEQQFYNAMFRKGYRPPVESIPSVLQIHNAVNERSWAEVRKWERDLHGNGD---PRLAKFIGRPKDLSPRAWFNSNILMTQAPFDR 224          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10995.649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L219_9PHAE2.560e-4367.27Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
D8LGP6_ECTSI5.170e-4153.06Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
A0A835ZPE3_9STRA6.210e-3764.13Holocytochrome c-type synthase n=1 Tax=Tribonema m... [more]
A0A7S1UN93_9STRA1.650e-3261.80Holocytochrome c-type synthase n=1 Tax=Grammatopho... [more]
A4S929_OSTLU4.900e-3060.22Holocytochrome c-type synthase (Fragment) n=1 Tax=... [more]
A0A7S3HNG9_9STRA5.350e-3060.67Holocytochrome c-type synthase n=1 Tax=Spumella el... [more]
A0A5M6BU68_9TREE5.320e-2955.91Holocytochrome c-type synthase n=1 Tax=Kwoniella s... [more]
A0A3M7KZQ7_AUXPR7.600e-2859.55Holocytochrome c-type synthase n=4 Tax=Auxenochlor... [more]
B8C628_THAPS1.160e-2755.06Holocytochrome c-type synthase (Fragment) n=1 Tax=... [more]
K0SEF6_THAOC1.980e-2755.56Holocytochrome c-type synthase n=1 Tax=Thalassiosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10995contigS-dermatodea_contig10995:5987..6337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue4e-33
Seed eggNOG ortholog2880.D8LGP6
Preferred nameHCCS
KEGG rclassRC00727,RC02130
KEGG koko:K01764
KEGG ReactionR02480
KEGG Pathwayko00860,map00860
GOsGO:0003674,GO:0003824,GO:0004408,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006464,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009887,GO:0009987,GO:0016020,GO:0016043,GO:0016829,GO:0016846,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:1901564
EggNOG free text desc.holocytochrome-c synthase activity
EggNOG OGsKOG3996@1,KOG3996@2759
EC4.4.1.17
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCytochrome c/c1 haem-lyase
Ec32 orthologEc-10_003030.1
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924182.523086-CDS-S-dermatodea_contig10995:5986..61421622924182.523086-CDS-S-dermatodea_contig10995:5986..6142Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10995 5987..6142 +
1694079074.7361543-CDS-S-dermatodea_contig10995:5986..61421694079074.7361543-CDS-S-dermatodea_contig10995:5986..6142Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10995 5987..6142 +
1622924182.5322082-CDS-S-dermatodea_contig10995:6214..63371622924182.5322082-CDS-S-dermatodea_contig10995:6214..6337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10995 6215..6337 +
1694079074.7521155-CDS-S-dermatodea_contig10995:6214..63371694079074.7521155-CDS-S-dermatodea_contig10995:6214..6337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10995 6215..6337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10995.649.1prot_S-dermatodea_contig10995.649.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10995 5987..6337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10995.649.1

>prot_S-dermatodea_contig10995.649.1 ID=prot_S-dermatodea_contig10995.649.1|Name=mRNA_S-dermatodea_contig10995.649.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
EGSAWVYPSEQQYYNAIKRKGYKASATDMPSTLAIHNAVNEKGWEMVKDW
ERRGGEGDVPAPKLLRFTGRPKDVSPKAWLKTNLLGYHPPFDR
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mRNA from alignment at S-dermatodea_contig10995:5987..6337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10995.649.1 ID=mRNA_S-dermatodea_contig10995.649.1|Name=mRNA_S-dermatodea_contig10995.649.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at S-dermatodea_contig10995:5987..6337+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGGCTCGGCGTGGGTGTACCCGTCCGAGCAGCAGTACTACAACGCCAT CAAGCGAAAGGGTTACAAGGCATCCGCCACGGACATGCCCTCGACCCTCG CCATACACAACGCAGTCAACGAGAAAGGCTGGGAAATGGTCAAGGATTGG GAGAGGGTGCACGCTGCGGCGGCTGCTTCGGCAGCGGTAGCGGCGGCGGC GACAGGGGTAGCGAGTGGGGACAGGGAGAGGGGGGGTGAGGGCGACGTTC CGGCACCGAAGCTGCTGCGGTTTACGGGGAGGCCGAAGGATGTGTCGCCC AAGGCGTGGCTCAAGACCAACCTGCTCGGCTACCACCCGCCTTTCGATAG G
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Coding sequence (CDS) from alignment at S-dermatodea_contig10995:5987..6337+

>mRNA_S-dermatodea_contig10995.649.1 ID=mRNA_S-dermatodea_contig10995.649.1|Name=mRNA_S-dermatodea_contig10995.649.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig10995:5987..6337+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGGCTCGGCGTGGGTGTACCCGTCCGAGCAGCAGTACTACAACGCCAT
CAAGCGAAAGGGTTACAAGGCATCCGCCACGGACATGCCCTCGACCCTCG
CCATACACAACGCAGTCAACGAGAAAGGCTGGGAAATGGTCAAGGATTGG
GAGAGGGAAGGCTCGGCGTGGGTGTACCCGTCCGAGCAGCAGTACTACAA
CGCCATCAAGCGAAAGGGTTACAAGGCATCCGCCACGGACATGCCCTCGA
CCCTCGCCATACACAACGCAGTCAACGAGAAAGGCTGGGAAATGGTCAAG
GATTGGGAGAGGAGGGGGGGTGAGGGCGACGTTCCGGCACCGAAGCTGCT
GCGGTTTACGGGGAGGCCGAAGGATGTGTCGCCCAAGGCGTGGCTCAAGA
CCAACCTGCTCGGCTACCACCCGCCTTTCGATAGGAGGGGGGGTGAGGGC
GACGTTCCGGCACCGAAGCTGCTGCGGTTTACGGGGAGGCCGAAGGATGT
GTCGCCCAAGGCGTGGCTCAAGACCAACCTGCTCGGCTACCACCCGCCTT
TCGATAGG
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