mRNA_S-dermatodea_contig10906.608.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10906.608.1
Unique NamemRNA_S-dermatodea_contig10906.608.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10906.608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10906contigS-dermatodea_contig10906:4363..6036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size750
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924179.9760213-CDS-S-dermatodea_contig10906:4362..47641622924179.9760213-CDS-S-dermatodea_contig10906:4362..4764Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10906 4363..4764 +
1694079073.027146-CDS-S-dermatodea_contig10906:4362..47641694079073.027146-CDS-S-dermatodea_contig10906:4362..4764Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10906 4363..4764 +
1622924179.991039-CDS-S-dermatodea_contig10906:5690..60351622924179.991039-CDS-S-dermatodea_contig10906:5690..6035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10906 5691..6035 +
1694079073.0365021-CDS-S-dermatodea_contig10906:5690..60351694079073.0365021-CDS-S-dermatodea_contig10906:5690..6035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10906 5691..6035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10906.608.1prot_S-dermatodea_contig10906.608.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10906 4363..6035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10906.608.1

>prot_S-dermatodea_contig10906.608.1 ID=prot_S-dermatodea_contig10906.608.1|Name=mRNA_S-dermatodea_contig10906.608.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=249bp
LLDSSHETPQTPTPAIYHPVEERGELKPVAVTTWAPPPQRRPGAENAAWE
LLHFVPLPVGACGAEARNGKELGVSAEMCNGGVMRTDKPSEIEGAENTES
ELLLEVPGAGEKQRRECAEAPEIGVGARAAFLEEAESSSHPPQERTQAGT
DAMATPSAPQGSEPQGSEHPPQDSLPSPPPSKPITPASDAGNLSVEPTAN
ISVVVEGTKGGAVETVPLLASGAVDGLMLGAAGTASDATKRGGAEREKA
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mRNA from alignment at S-dermatodea_contig10906:4363..6036+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10906.608.1 ID=mRNA_S-dermatodea_contig10906.608.1|Name=mRNA_S-dermatodea_contig10906.608.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1674bp|location=Sequence derived from alignment at S-dermatodea_contig10906:4363..6036+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCTGGATTCTTCGCACGAGACGCCCCAGACGCCTACCCCTGCCATCTA
TCACCCGGTCGAGGAGCGCGGTGAGTTGAAGCCTGTGGCTGTCACGACCT
GGGCGCCGCCGCCGCAGCGTAGACCTGGAGCGGAAAACGCCGCCTGGGAA
CTCCTTCACTTTGTCCCGTTGCCTGTTGGGGCATGCGGGGCGGAGGCCCG
GAACGGTAAGGAGCTTGGCGTTTCCGCAGAGATGTGTAACGGAGGGGTGA
TGCGGACAGACAAACCATCGGAGATTGAGGGTGCAGAGAATACGGAAAGC
GAGTTACTTCTAGAGGTGCCAGGGGCTGGCGAGAAGCAGCGACGAGAGTG
TGCGGAGGCCCCAGAGATTGGAGTTGGGGCTAGGGCGGCCTTTTTGGAGG
AGGTAAGCGACCGGGGGTTACGCGTAGAGAAGACTTTGTAACCGTTTGGT
CCCGTGTTCGGTGAGTCCTTCCTCCGCTAATGAGTCCATTATCGTGTACT
TTGGCCGTGTCCGCGTGCTTGTACTGTAGCCTGTTTTTTTTTTATGCACA
GCGCCAGTCCAGACCGTTGCTTCCTTGTTTCCGATTGCTCTGCTGCGTTG
CAGCACATAATGATACAGGTGTTACTTGTAGGTCACGTGCTACTACAAAT
CGAAGAGTAAGGACAATGGGCGGTACTTGTGGCACTTTGCAGGGTTACAA
TAGTGTTCACCGTTCATGCCCCTGTTGGCTCGGCCTTTACCCCCCTGTCG
AAATCCTCTGATGTGTTTAACGGGGATAATCAATCGGCCTTGGAGCTGAG
TCGCTGAACCTGTAGCGCAAAAATTAAGAAGGTGGATGTAAGGGCTTCGA
ACCCCTATACTGAGTAAGACGTGAGCTGTCTCCGTTCTGCCGCGGAAAGT
GCACAAGAGTGAGCAAGCAAGCACTCGAAACATCGGTGGTTTTGCGGGAA
AGTTGAGGCGAAGTCGAACTGGTGGTTGCAAAGACGTACCTTGGAGGGAT
GGAAGCTCCGTTGTGGACCACAGGCAGGATATGAATAAGGCCGACCGGTC
GGACGTTAGGACAGAATAAACAAAGACGAAAACATCCCGCTGATGAACCT
TGGGTTAGGCCACACAACACGATATGTTTCGCGCCAATTCGCAAGTAGTC
GCGGGGGCTATCGAGTATGTGAGGCAAACAAAAACCTCGCAGTAACCTGC
CCGGGAAGTGTCGATTATTCCGTCCGAACAGCTTCATCTCAAGCGACCTT
TGTTTCCCAATCAAAGGCACTCCACCCAGCTGAACACACGTCGTACGACG
CCCCGCGCTTAACCCTGAAACGTCGCAGGCCGAATCATCTAGCCATCCGC
CTCAAGAACGTACCCAGGCTGGAACCGACGCCATGGCAACGCCATCCGCG
CCACAGGGCTCGGAGCCACAGGGCTCCGAGCACCCGCCCCAAGACTCCCT
CCCCTCGCCGCCGCCGTCCAAACCCATCACACCTGCTTCAGACGCGGGGA
ACCTCTCAGTAGAGCCAACTGCTAATATCTCGGTGGTCGTTGAAGGCACC
AAAGGGGGTGCAGTTGAGACGGTGCCGTTGCTGGCTTCGGGGGCGGTAGA
TGGTTTGATGCTGGGCGCAGCGGGCACGGCTAGCGACGCTACGAAGCGAG
GGGGGGCGGAAAGGGAGAAGGCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10906:4363..6036+

>mRNA_S-dermatodea_contig10906.608.1 ID=mRNA_S-dermatodea_contig10906.608.1|Name=mRNA_S-dermatodea_contig10906.608.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at S-dermatodea_contig10906:4363..6036+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCTGGATTCTTCGCACGAGACGCCCCAGACGCCTACCCCTGCCATCTA
TCACCCGGTCGAGGAGCGCGGTGAGTTGAAGCCTGTGGCTGTCACGACCT
GGGCGCCGCCGCCGCAGCGTAGACCTGGAGCGGAAAACGCCGCCTGGGAA
CTCCTTCACTTTGTCCCGTTGCCTGTTGGGGCATGCGGGGCGGAGGCCCG
GAACGGTAAGGAGCTTGGCGTTTCCGCAGAGATGTGTAACGGAGGGGTGA
TGCGGACAGACAAACCATCGGAGATTGAGGGTGCAGAGAATACGGAAAGC
GAGTTACTTCTAGAGGTGCCAGGGGCTGGCGAGAAGCAGCGACGAGAGTG
TGCGGAGGCCCCAGAGATTGGAGTTGGGGCTAGGGCGGCCTTTTTGGAGG
AGCTGCTGGATTCTTCGCACGAGACGCCCCAGACGCCTACCCCTGCCATC
TATCACCCGGTCGAGGAGCGCGGTGAGTTGAAGCCTGTGGCTGTCACGAC
CTGGGCGCCGCCGCCGCAGCGTAGACCTGGAGCGGAAAACGCCGCCTGGG
AACTCCTTCACTTTGTCCCGTTGCCTGTTGGGGCATGCGGGGCGGAGGCC
CGGAACGGTAAGGAGCTTGGCGTTTCCGCAGAGATGTGTAACGGAGGGGT
GATGCGGACAGACAAACCATCGGAGATTGAGGGTGCAGAGAATACGGAAA
GCGAGTTACTTCTAGAGGTGCCAGGGGCTGGCGAGAAGCAGCGACGAGAG
TGTGCGGAGGCCCCAGAGATTGGAGTTGGGGCTAGGGCGGCCTTTTTGGA
GGAGGCCGAATCATCTAGCCATCCGCCTCAAGAACGTACCCAGGCTGGAA
CCGACGCCATGGCAACGCCATCCGCGCCACAGGGCTCGGAGCCACAGGGC
TCCGAGCACCCGCCCCAAGACTCCCTCCCCTCGCCGCCGCCGTCCAAACC
CATCACACCTGCTTCAGACGCGGGGAACCTCTCAGTAGAGCCAACTGCTA
ATATCTCGGTGGTCGTTGAAGGCACCAAAGGGGGTGCAGTTGAGACGGTG
CCGTTGCTGGCTTCGGGGGCGGTAGATGGTTTGATGCTGGGCGCAGCGGG
CACGGCTAGCGACGCTACGAAGCGAGGGGGGGCGGAAAGGGAGAAGGCAG
CCGAATCATCTAGCCATCCGCCTCAAGAACGTACCCAGGCTGGAACCGAC
GCCATGGCAACGCCATCCGCGCCACAGGGCTCGGAGCCACAGGGCTCCGA
GCACCCGCCCCAAGACTCCCTCCCCTCGCCGCCGCCGTCCAAACCCATCA
CACCTGCTTCAGACGCGGGGAACCTCTCAGTAGAGCCAACTGCTAATATC
TCGGTGGTCGTTGAAGGCACCAAAGGGGGTGCAGTTGAGACGGTGCCGTT
GCTGGCTTCGGGGGCGGTAGATGGTTTGATGCTGGGCGCAGCGGGCACGG
CTAGCGACGCTACGAAGCGAGGGGGGGCGGAAAGGGAGAAGGCA
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