mRNA_S-dermatodea_contig10893.595.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10893.595.1
Unique NamemRNA_S-dermatodea_contig10893.595.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10893.595.1 vs. uniprot
Match: A0A6H5JYY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY2_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.510e-33
Identity = 72/147 (48.98%), Postives = 92/147 (62.59%), Query Frame = -3 
Query:    4 AAAKDHFGTAAHCLGWYLRDDGGR-------LGGREEAPNVALIFVARLGSLKMLQWCRKHSDVVTVGFCYRCVDVEGWARVAPDAAGAGHVDIHVVLCCLDNGWEYTDSIMESAASEGRSHVVMALEGRGYSSCLLQVSEEAAPAE 423
            AA+   F T A  L W+  DD           GG++  P+  L  VARLG L+MLQWCR +  +V+   C  C    GW+RV  DAAGAGHVD+  VL CLDNGW Y++  MESAA EGRS+V+ AL GRG++ C +QV E+AAP +
Sbjct:  308 AASYGSFRTVAQLLTWWWTDDENHGLHGLDVTGGQQLVPDGVLFMVARLGHLQMLQWCRTNCPLVSRDLCLYCASPNGWSRVPADAAGAGHVDL--VLWCLDNGWNYSERWMESAAKEGRSNVIAALVGRGFA-CQVQV-EQAAPCD 450
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10893.595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYY2_9PHAE2.510e-3348.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10893contigS-dermatodea_contig10893:7105..7631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924178.7784595-CDS-S-dermatodea_contig10893:7104..74221622924178.7784595-CDS-S-dermatodea_contig10893:7104..7422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10893 7105..7422 +
1694079072.1369004-CDS-S-dermatodea_contig10893:7104..74221694079072.1369004-CDS-S-dermatodea_contig10893:7104..7422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10893 7105..7422 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924178.7887647-UTR-S-dermatodea_contig10893:7422..76311622924178.7887647-UTR-S-dermatodea_contig10893:7422..7631Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10893 7423..7631 +
1694079072.1575265-UTR-S-dermatodea_contig10893:7422..76311694079072.1575265-UTR-S-dermatodea_contig10893:7422..7631Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10893 7423..7631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10893.595.1prot_S-dermatodea_contig10893.595.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10893 7105..7422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10893.595.1

>prot_S-dermatodea_contig10893.595.1 ID=prot_S-dermatodea_contig10893.595.1|Name=mRNA_S-dermatodea_contig10893.595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
PFSGRSFFADLQKARRVAPPLQRHDDVRTSLASSRLHYAVSVFPPIIEAT
QNHMYVHMPSARSVWSHTCPSLDVDTTVAEAYSHNVAVFAAPLQHLQTSE
SGYED*
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mRNA from alignment at S-dermatodea_contig10893:7105..7631+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10893.595.1 ID=mRNA_S-dermatodea_contig10893.595.1|Name=mRNA_S-dermatodea_contig10893.595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=527bp|location=Sequence derived from alignment at S-dermatodea_contig10893:7105..7631+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCTTCAGCGGGCGCAGCTTCTTCGCTGACCTGCAAAAGGCACGACGAGT
AGCCCCTCCCCTCCAACGCCATGACGACGTGCGAACGTCCCTCGCTAGCA
GCAGACTCCATTATGCTGTCAGTGTATTCCCACCCATTATCGAGGCAACA
CAGAACCACATGTATGTCCACATGCCCAGCGCCCGCAGCGTCTGGAGCCA
CACGTGCCCATCCCTCGACGTCGACACAACGGTAGCAGAAGCCTACAGTC
ACAACGTCGCTGTGTTTGCGGCACCACTGCAACATCTTCAAACTTCCGAG
TCTGGCTACGAAGATTAGCGCGACATTGGGGGCTTCCTCTCGACCGCCTA
GCCGACCACCGTCATCTCTCAAATACCATCCCAAACAGTGCGCTGCCGTG
CCGAAATGGTCTTTGGCGGCAGCATGGCGTATGGCGTCTTGTGCTGAGCA
CTGTTATTTGCTGTACCTACCTGGTACGTATGATGTTACAGTTTTGTACT
TGATCAGCAGAGAGAGCTGGTGAGCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10893:7105..7631+

>mRNA_S-dermatodea_contig10893.595.1 ID=mRNA_S-dermatodea_contig10893.595.1|Name=mRNA_S-dermatodea_contig10893.595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig10893:7105..7631+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCTTCAGCGGGCGCAGCTTCTTCGCTGACCTGCAAAAGGCACGACGAGT
AGCCCCTCCCCTCCAACGCCATGACGACGTGCGAACGTCCCTCGCTAGCA
GCAGACTCCATTATGCTGTCAGTGTATTCCCACCCATTATCGAGGCAACA
CAGAACCACATGTATGTCCACATGCCCAGCGCCCGCAGCGTCTGGAGCCA
CACGTGCCCATCCCTCGACGTCGACACAACGGTAGCAGAAGCCTACAGTC
ACAACGTCGCTGTGTTTGCGGCACCACTGCAACATCTTCAAACTTCCGAG
TCTGGCTACGAAGATTAGCCCTTCAGCGGGCGCAGCTTCTTCGCTGACCT
GCAAAAGGCACGACGAGTAGCCCCTCCCCTCCAACGCCATGACGACGTGC
GAACGTCCCTCGCTAGCAGCAGACTCCATTATGCTGTCAGTGTATTCCCA
CCCATTATCGAGGCAACACAGAACCACATGTATGTCCACATGCCCAGCGC
CCGCAGCGTCTGGAGCCACACGTGCCCATCCCTCGACGTCGACACAACGG
TAGCAGAAGCCTACAGTCACAACGTCGCTGTGTTTGCGGCACCACTGCAA
CATCTTCAAACTTCCGAGTCTGGCTACGAAGATTAG
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