mRNA_S-dermatodea_contig10869.578.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10869.578.1
Unique NamemRNA_S-dermatodea_contig10869.578.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10869.578.1 vs. uniprot
Match: D8LEB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.770e-29
Identity = 70/125 (56.00%), Postives = 86/125 (68.80%), Query Frame = 1 
Query:    1 VRQSAKHSSANYEPGEKKSILATPEVRPRKWRAADVTVGYFVIRRWVPRDQEHLTAELHGGLTDKAEIAAAAKFAFRSGGKSSSRFKSRSTRTSVSSPPVSTLPR--GKVAPNNRVTGRSSPGDS 369
            VRQSAKH+S  Y P EK S+ +TP VRPR WR ADV  GYF ++RW+PRDQ+HLTA LHGGLTD AEIAAA K + R+  K+S+RFKSR+   S +   +STL R  G V  N+   G +  G S
Sbjct:   10 VRQSAKHASTYYIPDEKNSLFSTPGVRPRGWRTADVAAGYFTVKRWMPRDQQHLTAGLHGGLTDPAEIAAA-KQSLRANSKASTRFKSRNRMGSGAR--LSTLRRSSGSVQDNSNFGGAAGGGSS 131
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BLAST of mRNA_S-dermatodea_contig10869.578.1 vs. uniprot
Match: A0A835ZBY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 9.190e-9
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 VRQSAKHSSANYEPG--EKKSILATPEVRPRKWRAADVTVGYFVIRRWVPRDQEHLTAELHGGLTD 192
            VRQSA+  +  Y     E+ S+LA  ++R R+W+  +V +G F +++WVP+ Q+HLTAELH    D
Sbjct:   13 VRQSARGGTETYNDFIVEEASVLAFKDIRAREWQKVEVQLGTFKVKKWVPKSQQHLTAELHEHKAD 78
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10869.578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEB3_ECTSI1.770e-2956.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBY9_9STRA9.190e-942.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10869contigS-dermatodea_contig10869:4041..5862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size443
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10869.578.1prot_S-dermatodea_contig10869.578.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10869 4042..5862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924177.33393-CDS-S-dermatodea_contig10869:4041..42631622924177.33393-CDS-S-dermatodea_contig10869:4041..4263Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10869 4042..4263 -
1694079070.9208822-CDS-S-dermatodea_contig10869:4041..42631694079070.9208822-CDS-S-dermatodea_contig10869:4041..4263Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10869 4042..4263 -
1622924177.3449485-CDS-S-dermatodea_contig10869:4835..49551622924177.3449485-CDS-S-dermatodea_contig10869:4835..4955Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10869 4836..4955 -
1694079070.931488-CDS-S-dermatodea_contig10869:4835..49551694079070.931488-CDS-S-dermatodea_contig10869:4835..4955Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10869 4836..4955 -
1622924177.3584664-CDS-S-dermatodea_contig10869:5763..58621622924177.3584664-CDS-S-dermatodea_contig10869:5763..5862Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10869 5764..5862 -
1694079070.9422803-CDS-S-dermatodea_contig10869:5763..58621694079070.9422803-CDS-S-dermatodea_contig10869:5763..5862Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10869 5764..5862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10869.578.1

>prot_S-dermatodea_contig10869.578.1 ID=prot_S-dermatodea_contig10869.578.1|Name=mRNA_S-dermatodea_contig10869.578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=147bp
VRQSAKHSSANYEPGEKKSILATPEVRPRKWRAADVTVGYFVIRRWVPRD
QEHLTAELHGGLTDKAEIAAAAKFAFRSGGKSSSRFKSRSTRTSVSSPPV
STLPRGKVAPNNRVTGRSSPGDSSNTPWTGGPPIVPPTSALPYSGAA
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mRNA from alignment at S-dermatodea_contig10869:4041..5862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10869.578.1 ID=mRNA_S-dermatodea_contig10869.578.1|Name=mRNA_S-dermatodea_contig10869.578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1822bp|location=Sequence derived from alignment at S-dermatodea_contig10869:4041..5862- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCGACAGTCGGCCAAGCACTCGTCGGCGAACTACGAGCCGGGCGAAAA
GAAGAGCATCCTAGCCACCCCGGAGGTTCGGCCGAGAAAGTGGCGAGCGG
TGAGGGCGCGTTCGTCCGTTGGTCGGGGTCTCTGGTTGCAGTTGTTGGCC
TCCGCGGGAACACGTTGTGCACTACACATTACACACTCCCTGTCATAGAC
CATACTAACGGTACAATATATAAGTATATACTGGCGGTATGAGGACATGG
TGGCCCGGGAGAGGAAGAAGGTCCAGAGGGTGCAAGACCCTAGGGAGACA
TGTTTTCATTTTCAGTGGGTATGACAGCGACGAGCCCTGTAATATCACAA
CAGTGTAGTAATAGTATCACTATAGTATTGTATCACTTCAAAATAACTCG
CTGGGTATTGTCCCGTTCTTGGCCTTGCAATCGTTCAGAGGCGATCGATC
AACCTCGACCGTGGGTGTTGGAAAACCTCCGGGATGTGCGTGCAGGGGAC
TATTAATAGAGCTATTTTCTTGGAATCATAGGCTCTCCACAGGTAGATGC
AGTACAAAACAAAAGATATAGGGGAGACTTTTCACAAGAGCCGTAAATTA
TGTATCACAGACATACATACACATATAGTGGTACAGTGTGTTACAATACA
TTTCTGCGTTGCGGATGGTTCCGCCAGCTATACTACAACAGAAGGTTTTG
TAAACTCACAACGACAGATACAGCATTCATATTTGCACATACCTGTACAC
ATCACCGTTGTACCCGTTCTCCGTCCTTTATCGATTCGCTACCCTACGCC
ACCTGTAGAAGAATGGGCGTGAGTCTCCGGTTCGCACCAAGTCGCCACCA
CCTATAACTCCGTCCTCGCGCCATTCCAACTTTCGTCGATTTCCCGCTTT
GACCCAGGCGGACGTTACGGTAGGCTATTTTGTGATTAGAAGATGGGTAC
CCCGGGACCAGGAGCACTTGACCGCGGAGCTCCACGGCGGACTGACTGAC
AAGGCCGAGATCGCCGCCGCCGCGAAGGTGGGTTGTTGTAGAGAGAGGGG
GCGTTTTCCGGTTGTCGTATTTGTGTGGTGTTGGTTCGTGAGTGGAATGG
TCGTCGTGTTTTGTCGGGTGTCTTGTCACAGCAGGAAAGGCGATCGCGGC
TGGTTTTTGCTGAAGCGCTGCTCCACAGAGTACCTCGCGAGTTTGTGGTT
GTTTTACGGTTTTGTCGCGGTTAGATCCACGTACCCTCGCTCATGCGTGC
TCCCTCGAACGCCGCATCGTCCTTGCAATCCGCTAGTTCGCACACACACA
GCTCTCTCTCTCTATATATATATATATACTGGTATCTATTTGTTTCCGCC
ACCCCGGCATACCCCTCCGTTCCGGCATTGTTGGGATACGTGGTGTACGT
CCGTTTGGAGATCCAACAAAATATCATACGACATACGTTACACATAAGAA
CCCCCTCCCCCTCCCCGCCCCCGCCCCCGCGTGTCCAACTCGAAGCATAA
AACGCCCGCTCCAGTATGTTCCCCCTCTCCTCCACCCGATGAACGAAATG
AACAAACGACTACCCTTCCCCCCCCCCCCCCCCCCCCGTTCTTACCCAGT
TTGCCTTCCGAAGCGGAGGGAAGTCCTCCTCGAGATTTAAGAGCAGGTCT
ACAAGGACAAGCGTCTCCAGCCCGCCAGTCTCGACCCTGCCGAGGGGAAA
AGTGGCGCCCAACAACCGGGTGACCGGGCGCTCGTCTCCGGGCGATAGCA
GTAACACGCCGTGGACGGGGGGCCCTCCCATCGTGCCTCCGACATCGGCC
TTGCCGTACTCCGGGGCGGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10869:4041..5862-

>mRNA_S-dermatodea_contig10869.578.1 ID=mRNA_S-dermatodea_contig10869.578.1|Name=mRNA_S-dermatodea_contig10869.578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at S-dermatodea_contig10869:4041..5862- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCGACAGTCGGCCAAGCACTCGTCGGCGAACTACGAGCCGGGCGAAAA
GAAGAGCATCCTAGCCACCCCGGAGGTTCGGCCGAGAAAGTGGCGAGCGG
TCCGACAGTCGGCCAAGCACTCGTCGGCGAACTACGAGCCGGGCGAAAAG
AAGAGCATCCTAGCCACCCCGGAGGTTCGGCCGAGAAAGTGGCGAGCGGC
GGACGTTACGGTAGGCTATTTTGTGATTAGAAGATGGGTACCCCGGGACC
AGGAGCACTTGACCGCGGAGCTCCACGGCGGACTGACTGACAAGGCCGAG
ATCGCCGCCGCCGCGAAGGCGGACGTTACGGTAGGCTATTTTGTGATTAG
AAGATGGGTACCCCGGGACCAGGAGCACTTGACCGCGGAGCTCCACGGCG
GACTGACTGACAAGGCCGAGATCGCCGCCGCCGCGAAGTTTGCCTTCCGA
AGCGGAGGGAAGTCCTCCTCGAGATTTAAGAGCAGGTCTACAAGGACAAG
CGTCTCCAGCCCGCCAGTCTCGACCCTGCCGAGGGGAAAAGTGGCGCCCA
ACAACCGGGTGACCGGGCGCTCGTCTCCGGGCGATAGCAGTAACACGCCG
TGGACGGGGGGCCCTCCCATCGTGCCTCCGACATCGGCCTTGCCGTACTC
CGGGGCGGCGTTTGCCTTCCGAAGCGGAGGGAAGTCCTCCTCGAGATTTA
AGAGCAGGTCTACAAGGACAAGCGTCTCCAGCCCGCCAGTCTCGACCCTG
CCGAGGGGAAAAGTGGCGCCCAACAACCGGGTGACCGGGCGCTCGTCTCC
GGGCGATAGCAGTAACACGCCGTGGACGGGGGGCCCTCCCATCGTGCCTC
CGACATCGGCCTTGCCGTACTCCGGGGCGGCG
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