mRNA_S-dermatodea_contig10844.571.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10844.571.1
Unique NamemRNA_S-dermatodea_contig10844.571.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10844.571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10844contigS-dermatodea_contig10844:433..1148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924176.6714597-CDS-S-dermatodea_contig10844:433..6061622924176.6714597-CDS-S-dermatodea_contig10844:433..606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10844 434..606 -
1694079070.4590008-CDS-S-dermatodea_contig10844:433..6061694079070.4590008-CDS-S-dermatodea_contig10844:433..606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10844 434..606 -
1622924176.6828885-CDS-S-dermatodea_contig10844:1069..11481622924176.6828885-CDS-S-dermatodea_contig10844:1069..1148Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10844 1070..1148 -
1694079070.4676692-CDS-S-dermatodea_contig10844:1069..11481694079070.4676692-CDS-S-dermatodea_contig10844:1069..1148Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10844 1070..1148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10844.571.1prot_S-dermatodea_contig10844.571.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10844 434..1148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10844.571.1

>prot_S-dermatodea_contig10844.571.1 ID=prot_S-dermatodea_contig10844.571.1|Name=mRNA_S-dermatodea_contig10844.571.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
DALWYGVVPVHVVPGRPVRARAARIPDGLPAGVPGLRVSVGHGDGPVHDA
RPGAGRCPGGSPASALLADAPEPGTGRRPRTAAA
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mRNA from alignment at S-dermatodea_contig10844:433..1148-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10844.571.1 ID=mRNA_S-dermatodea_contig10844.571.1|Name=mRNA_S-dermatodea_contig10844.571.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=716bp|location=Sequence derived from alignment at S-dermatodea_contig10844:433..1148- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGCCTTATGGTATGGCGTCGTACCCGTACATGTCGTTCCAGGGCGTCC
CGTACGCGCCCGCGCCGCAAGGATACCCGGTGAGTCACGAGTCGAGGGTT
CTGCGAGGGAAATTGTGGGCCGGCCTGGCGGGGCAAGCGCCTTATCGTGT
CGTGCCGTGTCCGGTCGTTGTTGGATGTACGATATGGTATACACGGCGGT
GATGGGGTGGTGAGAAGGCGTTGTGCTTCTGCGTGCGTGCGTGTCCCCCA
AATGGTGGAGTTAGTTTTTATTCGTTTCCTTTTATTCGTTTCCTTTGGTT
CTTTATATTTGCAAGTTGGTTCGTTGTTGATTGGTGGTTCGTTTTGGGCG
CGTCGTGTATCGGCATATGAGCGTTGTTTGGAGGACAGGGAAGAGTGTCG
ATGACGCTGTGTCCGAACTTGCAGCTTTTTGGGGATAAGTTAAGCCCCCG
CCCTCTCTTCCTTTCTCTCTTATTTTTCGTCGAGGCTTCAAGCGGTTAAT
AACCCCCCCCCCCCCTCCGCTTTCTCTTCTGCCGCGCTTCAGATGGGCTA
CCAGCAGGTGTACCAGGGCTACGCGTATCCGTCGGGCATGGCGATGGACC
CGTCCATGATGCAAGGCCAGGTGCCGGCCGGTGTCCAGGGGGGAGCCCAG
CAAGCGCACTCCTCGCCGATGCCCCAGAGCCAGGGACAGGGCGGCGCCCC
CGTACCGCAGCAGCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10844:433..1148-

>mRNA_S-dermatodea_contig10844.571.1 ID=mRNA_S-dermatodea_contig10844.571.1|Name=mRNA_S-dermatodea_contig10844.571.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig10844:433..1148- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGCCTTATGGTATGGCGTCGTACCCGTACATGTCGTTCCAGGGCGTCC
CGTACGCGCCCGCGCCGCAAGGATACCCGGACGCCTTATGGTATGGCGTC
GTACCCGTACATGTCGTTCCAGGGCGTCCCGTACGCGCCCGCGCCGCAAG
GATACCCGATGGGCTACCAGCAGGTGTACCAGGGCTACGCGTATCCGTCG
GGCATGGCGATGGACCCGTCCATGATGCAAGGCCAGGTGCCGGCCGGTGT
CCAGGGGGGAGCCCAGCAAGCGCACTCCTCGCCGATGCCCCAGAGCCAGG
GACAGGGCGGCGCCCCCGTACCGCAGCAGCAATGGGCTACCAGCAGGTGT
ACCAGGGCTACGCGTATCCGTCGGGCATGGCGATGGACCCGTCCATGATG
CAAGGCCAGGTGCCGGCCGGTGTCCAGGGGGGAGCCCAGCAAGCGCACTC
CTCGCCGATGCCCCAGAGCCAGGGACAGGGCGGCGCCCCCGTACCGCAGC
AGCA
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