mRNA_S-dermatodea_contig10838.566.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI) HSP 1 Score: 169 bits (427), Expect = 4.060e-49 Identity = 84/88 (95.45%), Postives = 88/88 (100.00%), Query Frame = 3
Query: 3 DSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTKDSDTK 266
+SIKRGMIRYLYLAIDLSKTM++GDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTR+GRAEKITELSGNPKAHMEALTKDSDTK
Sbjct: 56 ESIKRGMIRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEALTKDSDTK 143
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA) HSP 1 Score: 131 bits (330), Expect = 6.360e-35 Identity = 61/87 (70.11%), Postives = 76/87 (87.36%), Query Frame = 3
Query: 3 DSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTKDSDT 263
+IKRGMIRY++L IDLSK MSE DMRP+RLAVT ++V +FV +FDQNPLSQLGI++TRDGRAE++T+LSGNPKAH+EAL + DT
Sbjct: 67 QAIKRGMIRYVFLCIDLSKGMSETDMRPNRLAVTTKVVAEFVRGFFDQNPLSQLGIIITRDGRAERVTDLSGNPKAHIEALARSLDT 153
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A433Q0F6_9FUNG (VWFA domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433Q0F6_9FUNG) HSP 1 Score: 111 bits (278), Expect = 4.660e-28 Identity = 52/80 (65.00%), Postives = 67/80 (83.75%), Query Frame = 3
Query: 6 SIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEAL 245
+I+RG+IR+L+L IDLS+TM+E D+RPSRL +TL + FV YFDQNP+SQLGI++TRDG AEK+TELSGNP H+ AL
Sbjct: 76 TIQRGIIRHLFLVIDLSETMNEKDLRPSRLDLTLSYAEQFVLEYFDQNPISQLGIILTRDGVAEKLTELSGNPMEHVRAL 155
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: UPI000A2A4DF7 (general transcription factor IIH subunit 2 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4DF7) HSP 1 Score: 112 bits (280), Expect = 1.150e-27 Identity = 48/88 (54.55%), Postives = 73/88 (82.95%), Query Frame = 3
Query: 6 SIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTKDSDTKA 269
+++ GM+R+L+L ID+SK+M E D++P+R+A T +++++F+T YFDQNP+SQLGIL+T++ RAEK+TELSGNPK H+ A+ K KA
Sbjct: 53 NVRLGMMRHLFLVIDMSKSMEEADLKPTRIACTAKLLENFITEYFDQNPISQLGILITKNKRAEKLTELSGNPKLHINAIKKSCVVKA 140
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A507ESB1_9FUNG (Ssl1 domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ESB1_9FUNG) HSP 1 Score: 108 bits (269), Expect = 1.580e-27 Identity = 48/85 (56.47%), Postives = 69/85 (81.18%), Query Frame = 3
Query: 6 SIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTKDSD 260
+++RG+IR+LYL IDLS+ M+E D++PSR+ T+R+ ++F+ YFDQNPLSQLGI++TRD AE++TEL+GNP H AL K S+
Sbjct: 81 TVQRGIIRHLYLVIDLSRAMAELDLKPSRIECTMRLAEEFIGEYFDQNPLSQLGIIITRDALAEQLTELTGNPTDHTSALQKRSN 165
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A4P9XPD2_9FUNG (General transcription and DNA repair factor IIH n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XPD2_9FUNG) HSP 1 Score: 111 bits (278), Expect = 2.890e-27 Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 3
Query: 3 DSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEAL 245
D+I+RG+IR+L+L +DLS M E D+RPSRL +TL + + F+ YFDQNP+SQLGI++TRDG AEK+TELSGNP H+ AL
Sbjct: 73 DTIQRGIIRFLFLVLDLSNAMLEKDLRPSRLDLTLTLAESFIGEYFDQNPISQLGIIITRDGVAEKLTELSGNPMEHIRAL 153
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A7D9IS69_PARCT (General transcription factor IIH subunit 2-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IS69_PARCT) HSP 1 Score: 106 bits (264), Expect = 2.900e-27 Identity = 46/81 (56.79%), Postives = 66/81 (81.48%), Query Frame = 3
Query: 6 SIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALT 248
+I+ GM+R+LY+ +DLSK M E D++PSRL TL+++++F+ YFDQNP+SQLGI+ T + RAEK++ELSGNP+ H ALT
Sbjct: 54 NIRLGMMRHLYIILDLSKAMEEADLKPSRLFCTLKLLENFIVEYFDQNPISQLGIISTNNKRAEKLSELSGNPRIHASALT 134
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A6P8J4X2_ACTTE (general transcription factor IIH subunit 2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J4X2_ACTTE) HSP 1 Score: 110 bits (276), Expect = 3.420e-27 Identity = 46/82 (56.10%), Postives = 71/82 (86.59%), Query Frame = 3
Query: 6 SIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTK 251
+++ GM+R++YL ID+SK M E D++P+RL T++++++F+T YFDQNP+SQ+GI++TR+ RAEK+TELSGNPK H++AL K
Sbjct: 51 NVRLGMMRHMYLIIDMSKAMEEADLKPTRLNCTVKLLENFITEYFDQNPISQIGIILTRNKRAEKLTELSGNPKLHIKALQK 132
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A162ZY90_PHYB8 (General transcription and DNA repair factor IIH n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162ZY90_PHYB8) HSP 1 Score: 110 bits (276), Expect = 5.540e-27 Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 3
Query: 9 IKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEAL 245
I+RG+IR+L+L IDLS+ M+E D+RPSR+ +TL Q FV YFDQNP+SQLGI+VTRDG AEK+TELSGNP H++AL
Sbjct: 75 IQRGIIRHLFLIIDLSEAMNEKDLRPSRVELTLNYAQQFVIEYFDQNPISQLGIIVTRDGIAEKLTELSGNPTDHIKAL 153
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A2G4SR88_RHIZD (General transcription and DNA repair factor IIH n=4 Tax=Rhizopus TaxID=4842 RepID=A0A2G4SR88_RHIZD) HSP 1 Score: 110 bits (275), Expect = 7.360e-27 Identity = 50/87 (57.47%), Postives = 69/87 (79.31%), Query Frame = 3
Query: 3 DSIKRGMIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTKDSDT 263
D I+RG+IR+L++ +DLS+ M+E D+RPSR+ +TL Q FV +FDQNP+SQ+GI++TRDG AEK+TELSGNP HM+AL +T
Sbjct: 73 DVIQRGIIRHLFIILDLSEAMNEKDLRPSRVELTLTYAQQFVVEFFDQNPISQMGIIITRDGIAEKLTELSGNPTDHMKALKSKKNT 159 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10838.566.1 >prot_S-dermatodea_contig10838.566.1 ID=prot_S-dermatodea_contig10838.566.1|Name=mRNA_S-dermatodea_contig10838.566.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp MIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGIback to top mRNA from alignment at S-dermatodea_contig10838:1142..2282+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10838.566.1 ID=mRNA_S-dermatodea_contig10838.566.1|Name=mRNA_S-dermatodea_contig10838.566.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1141bp|location=Sequence derived from alignment at S-dermatodea_contig10838:1142..2282+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10838:1142..2282+ >mRNA_S-dermatodea_contig10838.566.1 ID=mRNA_S-dermatodea_contig10838.566.1|Name=mRNA_S-dermatodea_contig10838.566.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig10838:1142..2282+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |