prot_S-dermatodea_contig10838.566.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10838.566.1
Unique Nameprot_S-dermatodea_contig10838.566.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length83
Homology
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 4.530e-45
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTKDSDTK 82
            MIRYLYLAIDLSKTM++GDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTR+GRAEKITELSGNPKAHMEALTKDSDTK
Sbjct:   62 MIRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEALTKDSDTK 143          
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.150e-31
Identity = 57/81 (70.37%), Postives = 71/81 (87.65%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTKDSDT 81
            MIRY++L IDLSK MSE DMRP+RLAVT ++V +FV  +FDQNPLSQLGI++TRDGRAE++T+LSGNPKAH+EAL +  DT
Sbjct:   73 MIRYVFLCIDLSKGMSETDMRPNRLAVTTKVVAEFVRGFFDQNPLSQLGIIITRDGRAERVTDLSGNPKAHIEALARSLDT 153          
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: UPI000A2A4DF7 (general transcription factor IIH subunit 2 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4DF7)

HSP 1 Score: 108 bits (269), Expect = 3.500e-26
Identity = 47/83 (56.63%), Postives = 69/83 (83.13%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTKDSDTKA 83
            M+R+L+L ID+SK+M E D++P+R+A T +++++F+T YFDQNP+SQLGIL+T++ RAEK+TELSGNPK H+ A+ K    KA
Sbjct:   58 MMRHLFLVIDMSKSMEEADLKPTRIACTAKLLENFITEYFDQNPISQLGILITKNKRAEKLTELSGNPKLHINAIKKSCVVKA 140          
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A6P8J4X2_ACTTE (general transcription factor IIH subunit 2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J4X2_ACTTE)

HSP 1 Score: 106 bits (265), Expect = 1.060e-25
Identity = 45/77 (58.44%), Postives = 67/77 (87.01%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTK 77
            M+R++YL ID+SK M E D++P+RL  T++++++F+T YFDQNP+SQ+GI++TR+ RAEK+TELSGNPK H++AL K
Sbjct:   56 MMRHMYLIIDMSKAMEEADLKPTRLNCTVKLLENFITEYFDQNPISQIGIILTRNKRAEKLTELSGNPKLHIKALQK 132          
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A7D9IS69_PARCT (General transcription factor IIH subunit 2-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IS69_PARCT)

HSP 1 Score: 101 bits (252), Expect = 1.490e-25
Identity = 44/76 (57.89%), Postives = 62/76 (81.58%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALT 76
            M+R+LY+ +DLSK M E D++PSRL  TL+++++F+  YFDQNP+SQLGI+ T + RAEK++ELSGNP+ H  ALT
Sbjct:   59 MMRHLYIILDLSKAMEEADLKPSRLFCTLKLLENFIVEYFDQNPISQLGIISTNNKRAEKLSELSGNPRIHASALT 134          
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A433Q0F6_9FUNG (VWFA domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433Q0F6_9FUNG)

HSP 1 Score: 104 bits (260), Expect = 1.680e-25
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 0
Query:    2 IRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEAL 75
            IR+L+L IDLS+TM+E D+RPSRL +TL   + FV  YFDQNP+SQLGI++TRDG AEK+TELSGNP  H+ AL
Sbjct:   82 IRHLFLVIDLSETMNEKDLRPSRLDLTLSYAEQFVLEYFDQNPISQLGIILTRDGVAEKLTELSGNPMEHVRAL 155          
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A507ESB1_9FUNG (Ssl1 domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ESB1_9FUNG)

HSP 1 Score: 101 bits (252), Expect = 4.470e-25
Identity = 46/79 (58.23%), Postives = 63/79 (79.75%), Query Frame = 0
Query:    2 IRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTKDSD 80
            IR+LYL IDLS+ M+E D++PSR+  T+R+ ++F+  YFDQNPLSQLGI++TRD  AE++TEL+GNP  H  AL K S+
Sbjct:   87 IRHLYLVIDLSRAMAELDLKPSRIECTMRLAEEFIGEYFDQNPLSQLGIIITRDALAEQLTELTGNPTDHTSALQKRSN 165          
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A8C8EW72_ONCTS (GTF2H2 family member C n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A8C8EW72_ONCTS)

HSP 1 Score: 100 bits (250), Expect = 5.370e-25
Identity = 44/81 (54.32%), Postives = 66/81 (81.48%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEALTKDSDT 81
            M+R+LY+ ID S+TM + D++P+RL  TL++V+ FV  YFDQNP+SQ+GI+ T++ RAEK+T+L+GNPK H++AL K  D+
Sbjct:   57 MMRHLYVVIDTSRTMEDQDLKPNRLTSTLKLVEYFVEEYFDQNPISQVGIITTKNKRAEKLTDLAGNPKKHIDALKKAKDS 137          
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A162ZY90_PHYB8 (General transcription and DNA repair factor IIH n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162ZY90_PHYB8)

HSP 1 Score: 104 bits (259), Expect = 1.190e-24
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 0
Query:    2 IRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEAL 75
            IR+L+L IDLS+ M+E D+RPSR+ +TL   Q FV  YFDQNP+SQLGI+VTRDG AEK+TELSGNP  H++AL
Sbjct:   80 IRHLFLIIDLSEAMNEKDLRPSRVELTLNYAQQFVIEYFDQNPISQLGIIVTRDGIAEKLTELSGNPTDHIKAL 153          
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Match: A0A0B7N1V3_9FUNG (General transcription and DNA repair factor IIH n=3 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7N1V3_9FUNG)

HSP 1 Score: 103 bits (258), Expect = 1.630e-24
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 0
Query:    2 IRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTRDGRAEKITELSGNPKAHMEAL 75
            IR+L+L IDLS+ M+E D+RPSR+ +TL   Q FV  YFDQNP+SQLGI++TRDG AEK+TELSGNP  H++AL
Sbjct:   80 IRHLFLVIDLSEAMNEKDLRPSRVELTLTYAQQFVIEYFDQNPISQLGIIITRDGIAEKLTELSGNPTDHIKAL 153          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10838.566.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP7_ECTSI4.530e-4596.34General transcription factor IIH subunit n=2 Tax=E... [more]
A0A835ZF22_9STRA1.150e-3170.37General transcription factor IIH subunit n=1 Tax=T... [more]
UPI000A2A4DF73.500e-2656.63general transcription factor IIH subunit 2 isoform... [more]
A0A6P8J4X2_ACTTE1.060e-2558.44general transcription factor IIH subunit 2-like n=... [more]
A0A7D9IS69_PARCT1.490e-2557.89General transcription factor IIH subunit 2-like n=... [more]
A0A433Q0F6_9FUNG1.680e-2566.22VWFA domain-containing protein n=1 Tax=Endogone sp... [more]
A0A507ESB1_9FUNG4.470e-2558.23Ssl1 domain-containing protein n=1 Tax=Spizellomyc... [more]
A0A8C8EW72_ONCTS5.370e-2554.32GTF2H2 family member C n=2 Tax=Clupeocephala TaxID... [more]
A0A162ZY90_PHYB81.190e-2466.22General transcription and DNA repair factor IIH n=... [more]
A0A0B7N1V3_9FUNG1.630e-2464.86General transcription and DNA repair factor IIH n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410coord: 1..83
e-value: 2.3E-28
score: 100.9
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 4..65
IPR007198Ssl1-likePFAMPF04056Ssl1coord: 9..80
e-value: 1.9E-26
score: 93.1
NoneNo IPR availablePANTHERPTHR12695GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2coord: 1..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10838contigS-dermatodea_contig10838:1162..2282 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10838.566.1mRNA_S-dermatodea_contig10838.566.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10838 1142..2282 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10838.566.1 ID=prot_S-dermatodea_contig10838.566.1|Name=mRNA_S-dermatodea_contig10838.566.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
MIRYLYLAIDLSKTMSEGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGI
LVTRDGRAEKITELSGNPKAHMEALTKDSDTKA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR007198Ssl1-like