mRNA_S-dermatodea_contig10793.532.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10793.532.1
Unique NamemRNA_S-dermatodea_contig10793.532.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10793.532.1 vs. uniprot
Match: D8LT64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT64_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.060e-53
Identity = 94/113 (83.19%), Postives = 99/113 (87.61%), Query Frame = 1 
Query:    1 RSSLYPLCPLSKLAEIGVMGAASSVCNTVGAFETALDLLRSDIVHLCVEGAKVPVDRLWPAEALLLNLWELQQHAISELRSSSPMVDVPLPMPRDPEERAEGSQHAL--RGGA 333
            RSS YPLCPLSKLAEIGVMGAAS+VC T+GAF+TALDLLR+DIVHLCVEGA VPVD LWPAEALLLNLWELQQHA+SELRSSSPMVDVPLPMPRDP E      H L  RGGA
Sbjct:  296 RSSQYPLCPLSKLAEIGVMGAASAVCKTMGAFDTALDLLRNDIVHLCVEGANVPVDSLWPAEALLLNLWELQQHAMSELRSSSPMVDVPLPMPRDPPEPKSAGFHRLGSRGGA 408
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BLAST of mRNA_S-dermatodea_contig10793.532.1 vs. uniprot
Match: A0A835Z9D6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.470e-22
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    4 SSLYPLCPLSKLAEIGVMGAASSVCNTVGAFETALDLLRSDIVHLCVEGAKVPVDRLWPAEALLLNLWELQQHAISELRSSSPMVDV 264
            S  YPLCP   +AE GV+G  +   ++  AFETALD+LRS++V LCV+GA VPVDRLWPAEALLLNLWEL +H   +L +S+  ++ 
Sbjct:  191 SEEYPLCPPHTVAEGGVIGGKAY--SSESAFETALDMLRSNVVTLCVQGAGVPVDRLWPAEALLLNLWELHKHVGQQLAASTAALET 275
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10793.532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT64_ECTSI1.060e-5383.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9D6_9STRA4.470e-2256.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10793contigS-dermatodea_contig10793:4266..7238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.9
Seed ortholog evalue6.7e-46
Seed eggNOG ortholog2880.D8LT64
EggNOG OGs2E6RT@1,2SDEH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUV radiation resistance protein/autophagy-related protein 14
Ec32 orthologEc-12_005410.1
Exons4
Model size348
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10793.532.1prot_S-dermatodea_contig10793.532.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10793 4266..7238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924173.1807146-CDS-S-dermatodea_contig10793:4265..43871622924173.1807146-CDS-S-dermatodea_contig10793:4265..4387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10793 4266..4387 +
1694079067.7856603-CDS-S-dermatodea_contig10793:4265..43871694079067.7856603-CDS-S-dermatodea_contig10793:4265..4387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10793 4266..4387 +
1622924173.1950445-CDS-S-dermatodea_contig10793:4987..51071622924173.1950445-CDS-S-dermatodea_contig10793:4987..5107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10793 4988..5107 +
1694079067.8025093-CDS-S-dermatodea_contig10793:4987..51071694079067.8025093-CDS-S-dermatodea_contig10793:4987..5107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10793 4988..5107 +
1622924173.2029097-CDS-S-dermatodea_contig10793:6149..62011622924173.2029097-CDS-S-dermatodea_contig10793:6149..6201Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10793 6150..6201 +
1694079067.8135076-CDS-S-dermatodea_contig10793:6149..62011694079067.8135076-CDS-S-dermatodea_contig10793:6149..6201Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10793 6150..6201 +
1622924173.2126696-CDS-S-dermatodea_contig10793:7184..72381622924173.2126696-CDS-S-dermatodea_contig10793:7184..7238Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10793 7185..7238 +
1694079067.8227823-CDS-S-dermatodea_contig10793:7184..72381694079067.8227823-CDS-S-dermatodea_contig10793:7184..7238Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10793 7185..7238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10793.532.1

>prot_S-dermatodea_contig10793.532.1 ID=prot_S-dermatodea_contig10793.532.1|Name=mRNA_S-dermatodea_contig10793.532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
RSSLYPLCPLSKLAEIGVMGAASSVCNTVGAFETALDLLRSDIVHLCVEG
AKVPVDRLWPAEALLLNLWELQQHAISELRSSSPMVDVPLPMPRDPEERA
EGSQHALRGGARQSSS
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mRNA from alignment at S-dermatodea_contig10793:4266..7238+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10793.532.1 ID=mRNA_S-dermatodea_contig10793.532.1|Name=mRNA_S-dermatodea_contig10793.532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2973bp|location=Sequence derived from alignment at S-dermatodea_contig10793:4266..7238+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATCTAGCCTTTACCCGTTGTGTCCGCTGTCCAAGCTTGCGGAAATAGG
AGTGATGGGGGCAGCTTCTTCGGTGTGCAATACGGTGGGCGCCTTCGAGA
CGGCGTTGGATCTTCTTCGAAGGTGATATAGCACGGTGTTGGTTTAATAC
CGAAGTTTTCGTTGACCGTAGTGAAAATCGTCCATCTGCAAGGTTCGTGT
GCGAGCCAAGGGAGCTTGTTTCTTAGGTCCAAGCGGTGGCGTTCGTTCAC
AGCGCTATTTTGCGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGAT
TTCCATTTTTTTGCACGCCCCTCGCTCTACGGCAGCGGTCGGCGAGCCGA
GAGAGACTATTGATGAGTGTGTTTGAAAGGCCAGGCCTTTGCCGTGGCAA
CAGTTGCACCTTCTCCAAGCTCGGTGGCTGAGTAGGGCAGCCGGAGATTC
CCACCTACTTCCAACCCTAAGGCCAAACGATATACCAGCACCTGTCTTGC
TAGATTGCGTGCGCTAGGCCGACCTTGTCCCCCTAACCCCCTCCCCACGG
GCTAGAGTTTTGTTTTTGTCGCGCACCGGCGACTGACCCTGCAAGACCTT
GACGACATTTACTTGTTGCTGCGTTTTTTTGTAGTCCGGCTACGGCTCAC
CGCCGAAAATGAAAAGCGAGTCAACACTCCTCCCCCACCGGAACTCCCCT
ATCTTTGCGTGTTGTTTCGCAGCGACATTGTGCACCTCTGCGTGGAAGGC
GCAAAGGTGCCGGTGGACAGGTTGTGGCCCGCCGAAGCCCTTCTGCTCAA
CCTTTGGGAGCTGCAGCAGCACGCCATTTCGGAGTTGAGAAGGTGTGTAT
AGAGGCGTTACTGGTGATCGTGGCGGGTTTTGCCTCTTGGGAGCGCTGCA
GTACTTTGTCTGCCTTGCTGTCCACTACTCGTTCGGATTTGTTGAGGGAA
GAGGGCGCCGGCTCAAGCGTGCACGGCTTCGCGCCACTGTTTCGCTTTCT
TGGCCCCGGCCCGATGTATCATGTCAATGAACCCTAGTGGACTTAACATG
ATCGAGATCGCGGATTTTGTGTCCTGGCTGCGGGTTTGTTTTGCAGCAGA
GAAATCCGAAAGGACAACAAAGTGCAAGCATGATAATCGTCTTCGGCTCA
GTTGAGGAAGGGGTGGAGGCCAAAAGTTTGCCGAATCTTCGTAGAATTGT
CGCGTGCAGTTCGTGAGCGTCAAGGGAAAGAAGCAGCACAATACTTGCAG
GCGCCCCGCCGGCGGGGAGTTTCTGATTGTCGGCAATCTCGTTCCCAGAA
GCTTCGCAGCGGCGCACGCACGCCGATCCTTTTTGCCTGGAGAGCCCAGT
TATTGGGGGCTTTGAAAGTATTAGCTTATGAGCAGCACACATCCAAGATT
GTAGGGAAGGCAGACAGACAGGCAGACCGACACAACCGCACACGCACAAA
CAAACGACGCCCTGCTTGCGATGTACACGTGCTATCTTTCTACATACGAG
ACGGATATTGATTTCTTCGCTTAGAAGGATTCGGCGCTCTTGATTTAATC
TTGCTCGAATCGGTCGAGTTTCGGATCATACGCCCCCCTGAAGACAGTAC
AGATTTATGAACACAGGACTAGCATTGTGGTCCACCCCCCCCCCCCCCCC
CGGTGTGGAAGTTGTACCGTGGCCAACGAGAGGAATCAAGAAGAGGTCGG
GTCCCGTCCCGACAACCAACTTCTCCGTGCGCTGCTGAATAAGATTGTTA
TTTACCATTGGTGGGCCACAAACCACAAATCACCAGCACCTTTACGGCTA
CGGCTACTCCTACTGATTCCTAGGCGTTGCAATCGTGTTCCTTGCTGTCC
CTCCCGCGGTGTCTGTGTGCGCGCGCGGATTCAGTTCGTCTCCGATGGTC
GATGTGCCGCTACCCATGCCGAGAGATCCCGAGGAGGTGAGCACTGGAAG
CGTAACGCCTGGCGGGGGTAGCGGGGGAGGCGAGGGCGTATGCTTCTGTT
TTAGCGCATGTCGTATCCAAACGGACATAGCTTGCGTTTTGCGACGCCAA
ACCGGATGTGCCGTGGGTTGATTGGACACGCTAATGTTGCACACTGAGTA
GGCGTGACTATATGCTCCAAGTACCGCAAAGAGAATTTGATCTCCGCGTG
AACGCACAAGCGCCGCACGCATACAGCATACACGATGGTACATGTGTGAT
ACACTCAGACTATATTGTGCTCACGAGTACTCCTGGCTGAGGACCGGTCG
AAAAGTTAATGGTTGCTCTAGGGCGTTTCAACAATCAATTGTCCGGCAGG
TATCCTACGAAATGTGACGCGTTTCACCCCTTTCGGGAGAGACAGGACTC
TTCGACCGAGGTCTCCAAGCTCACAGGACACTGCATGATCTCCCCCATGT
CCTATACATCGAACTTTTAGAGCCCCATACCGCAAGAGCCAACCTTCCCT
CGACCAACCTTACCAACCTTACCTCGACCAACCTCACGTCGAACCTCAAG
TGACAGAGGGATTATAGGTCTTAGTTTAAGACGGGGCGGAGGACAGGGGG
TTGGGTTTTTTTTCGCGCTAGGCGTCTTGAAAACCCTCGAAGCGTTGCGA
AAAGCACACCCGCGCCGAGAAGGTAATGATACGCATAAGTTCGGCTCTAA
ACACGCTGTATGTACTTGTCCCTGTACATAGACCTAATCGCTGAGGTTTC
TACAGTAGTCCACAGACAGCATACTGGTACAAGTACAAGTAGTATTAATA
GTAGGGGTCACGCCACACGCCTTTGAGACACCGTGCAACAAAAACCCTTA
CACGATATTACAGTAGTACCCAACTTCGCCTCTATCTCGCGTTTTTGCCG
CACACTCCGCCGCTGCTCTGTGCCCGCGCCGACGACCGACCTCGCATACT
TTTCGGGACATCGAACCAGCGAGCGGAGGGATCGCAACACGCGTTGCGCG
GCGGGGCACGGCAATCGTCGTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10793:4266..7238+

>mRNA_S-dermatodea_contig10793.532.1 ID=mRNA_S-dermatodea_contig10793.532.1|Name=mRNA_S-dermatodea_contig10793.532.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig10793:4266..7238+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATCTAGCCTTTACCCGTTGTGTCCGCTGTCCAAGCTTGCGGAAATAGG
AGTGATGGGGGCAGCTTCTTCGGTGTGCAATACGGTGGGCGCCTTCGAGA
CGGCGTTGGATCTTCTTCGAAGAGATCTAGCCTTTACCCGTTGTGTCCGC
TGTCCAAGCTTGCGGAAATAGGAGTGATGGGGGCAGCTTCTTCGGTGTGC
AATACGGTGGGCGCCTTCGAGACGGCGTTGGATCTTCTTCGAAGCGACAT
TGTGCACCTCTGCGTGGAAGGCGCAAAGGTGCCGGTGGACAGGTTGTGGC
CCGCCGAAGCCCTTCTGCTCAACCTTTGGGAGCTGCAGCAGCACGCCATT
TCGGAGTTGAGAAGCGACATTGTGCACCTCTGCGTGGAAGGCGCAAAGGT
GCCGGTGGACAGGTTGTGGCCCGCCGAAGCCCTTCTGCTCAACCTTTGGG
AGCTGCAGCAGCACGCCATTTCGGAGTTGAGAAGTTCGTCTCCGATGGTC
GATGTGCCGCTACCCATGCCGAGAGATCCCGAGGAGTTCGTCTCCGATGG
TCGATGTGCCGCTACCCATGCCGAGAGATCCCGAGGAGCGAGCGGAGGGA
TCGCAACACGCGTTGCGCGGCGGGGCACGGCAATCGTCGTCGCGAGCGGA
GGGATCGCAACACGCGTTGCGCGGCGGGGCACGGCAATCGTCGTCG
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