mRNA_S-dermatodea_contig10753.513.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10753.513.1
Unique NamemRNA_S-dermatodea_contig10753.513.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10753.513.1 vs. uniprot
Match: A0A6H5JA04_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA04_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.080e-23
Identity = 63/92 (68.48%), Postives = 73/92 (79.35%), Query Frame = 2 
Query:    2 QQEEAHERESEEQQAEKRSILEDLEALTERLKSAEXXXXXXXXXXXXRSNDLQERLVETRADKEQLEGRLKQLQDDYDTLSEQAHFSQSRAE 277
            QQ+E   RE E+QQAEKRS++EDLE +TERL+SA+            RSNDLQERLVETRA K QLEGRLKQ+QDDYDTLSEQAHF+QSRA+
Sbjct:  848 QQQEXXXRELEDQQAEKRSVVEDLEDVTERLRSAKEAHGKEVDEHQRRSNDLQERLVETRALKGQLEGRLKQVQDDYDTLSEQAHFTQSRAQ 939
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10753.513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JA04_9PHAE3.080e-2368.48Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10753contigS-dermatodea_contig10753:592..2233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size281
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10753.513.1prot_S-dermatodea_contig10753.513.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10753 592..2232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924172.0140133-CDS-S-dermatodea_contig10753:591..6451622924172.0140133-CDS-S-dermatodea_contig10753:591..645Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10753 592..645 +
1694079067.0027394-CDS-S-dermatodea_contig10753:591..6451694079067.0027394-CDS-S-dermatodea_contig10753:591..645Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10753 592..645 +
1622924172.0281985-CDS-S-dermatodea_contig10753:1377..15191622924172.0281985-CDS-S-dermatodea_contig10753:1377..1519Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10753 1378..1519 +
1694079067.0130765-CDS-S-dermatodea_contig10753:1377..15191694079067.0130765-CDS-S-dermatodea_contig10753:1377..1519Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10753 1378..1519 +
1622924172.0409591-CDS-S-dermatodea_contig10753:2149..22321622924172.0409591-CDS-S-dermatodea_contig10753:2149..2232Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10753 2150..2232 +
1694079067.0228999-CDS-S-dermatodea_contig10753:2149..22321694079067.0228999-CDS-S-dermatodea_contig10753:2149..2232Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10753 2150..2232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10753.513.1

>prot_S-dermatodea_contig10753.513.1 ID=prot_S-dermatodea_contig10753.513.1|Name=mRNA_S-dermatodea_contig10753.513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
AAGGGARKGKRGAAGREEVYLGGFGGSHGAPQVGRGGSPRRGGRAAAPQQ
RPAGTPRGNPGRQGAARGPPEAAAGRLRHPVGAGPLQPEPRGG
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mRNA from alignment at S-dermatodea_contig10753:592..2233+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10753.513.1 ID=mRNA_S-dermatodea_contig10753.513.1|Name=mRNA_S-dermatodea_contig10753.513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1642bp|location=Sequence derived from alignment at S-dermatodea_contig10753:592..2233+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGCAGGAGGAGGCGCACGAAAGGGAAAGCGAGGAGCAGCAGGCCGAGA
AGAGGTAGGGGGGAAGGGGGGGGGGGTTGCTTGCTTTGTTTGCTGCTGCT
ACGTATGTGGGTAAGGGAAGAGTTGGAGTTTTTTCTGTTTGCTCATTTTT
CTTTGACGTTTCTTTGTGGGTGGGGTTCTTGAGAGAGGTCTGTTGATTTG
GTGATCGTTGTGATTGGCGTCAGTACTTGCCGCTGCTATACTGTATACTG
TATATACAATAGCGAGTTTCTGGTGACCGAGGCTTGAGGATGCTGCTATG
GTACTGTTGTCTTGACTTTGCGACACCGCGATGTGTGTGCGTGTGACGCA
CATGCAGGAGGGGAGGAGTCGAGAAGGAGAGCAGGCGCAACAAGGATGAT
ACCCAGTATGTGCTGTTGCGCGCGTGTGCAAAAAAAAAGCGGCGCGTATT
TTGCGCACGGCGCAGTAGCACTTCTTGTGCGGGGAGATGCACGATTCCGT
TTCGGAGAGGAACGGTAGGCGCGAAGCACGGGGCCAGGCAATGCTTTACT
AACGGCCAACCAGAAACACTTTGGTGCTTGTTTTAAACGCTCTGACCGGC
CGCACATCAGATGTACTGTGTAGTATCCCGGCGGGTATGTTTCCGGTTTT
CTCCCTATGGATGGGTAACTCCTATATGTGTGCCGCGTCGTGTCGAAATG
TTTGTTCTTTCCTGCGTAAATGAGTCCGATTTTAGTGGGTTTATCTCACG
AATGATCCGATCCGCTCGCGTTGAAACCTTGCCCAGGTCTATCTTGGAGG
ATTTGGAGGCTCTCACGGAGCGCCTCAAGTCGGCCGAGGAGGCTCACCGC
GGAGAGGTGGAAGAGCAGCAGCGCCGCAGCAACGACCTGCAGGAACGCCT
CGTGGAAACCCGGGCAGACAAGGAGCAGGTAAACGACGCCGCTGCTTTTG
TGGAGTCACACGCAGATACGTGTGCTTGTATATAGCTGTTCTTGTTTTTG
TTTGTTTTGTTCACATGCTCGAAGTACTGCTGCCTTTGCGCGAACAAACT
CCCGTAGCTGCGTTTTGGTCGAGTTGCAACTCGCCTACGTTTCATCCCCC
CTTTTTTTTCTTTTTTTTTCTTTAGTCCGATTGAACCTTCCCGCTGTGCA
GGTATCGTATCACATACTGTAATCGAATAGATTGACACACATGGCGAGAC
AAATGTTCTTTTGTTGCAGAGGATTTGTTGGCCTGTGCCTAATACTATAA
TAGTGCCTCTTGCCCGTCCCACGAGAAGCGCCTTCTACAGAAAACAAACA
CTACGCGCATTGCTATGATATAAGATTATACCACCTTTTTCATCCACTAC
TTCTGCTCGCTCCGGCACACATATTCTAGTGCATTAACCACTTCTCCACA
CTAAACGCTTTACGTACTTGTACCCCAGCACCCGCGACATCCAAACACAT
CAGGACCCACCGCCACCACTTTTCCGCGCCGCTTGCTCCCGCCGACCATC
CCTATAAACACCTCTCTCTGCCCCCCCCCCCCCTCCCGAAACACACACAC
GACGCCAGCTCGAGGGCCGCCTGAAGCAGCTGCAGGACGACTACGACACC
CTGTCGGAGCAGGCCCACTTCAGCCAGAGCCGCGCGGAGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10753:592..2233+

>mRNA_S-dermatodea_contig10753.513.1 ID=mRNA_S-dermatodea_contig10753.513.1|Name=mRNA_S-dermatodea_contig10753.513.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig10753:592..2233+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGCAGGAGGAGGCGCACGAAAGGGAAAGCGAGGAGCAGCAGGCCGAGA
AGAGGCAGCAGGAGGAGGCGCACGAAAGGGAAAGCGAGGAGCAGCAGGCC
GAGAAGAGGTCTATCTTGGAGGATTTGGAGGCTCTCACGGAGCGCCTCAA
GTCGGCCGAGGAGGCTCACCGCGGAGAGGTGGAAGAGCAGCAGCGCCGCA
GCAACGACCTGCAGGAACGCCTCGTGGAAACCCGGGCAGACAAGGAGCAG
GTCTATCTTGGAGGATTTGGAGGCTCTCACGGAGCGCCTCAAGTCGGCCG
AGGAGGCTCACCGCGGAGAGGTGGAAGAGCAGCAGCGCCGCAGCAACGAC
CTGCAGGAACGCCTCGTGGAAACCCGGGCAGACAAGGAGCAGCTCGAGGG
CCGCCTGAAGCAGCTGCAGGACGACTACGACACCCTGTCGGAGCAGGCCC
ACTTCAGCCAGAGCCGCGCGGAGGACTCGAGGGCCGCCTGAAGCAGCTGC
AGGACGACTACGACACCCTGTCGGAGCAGGCCCACTTCAGCCAGAGCCGC
GCGGAGGA
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