mRNA_S-dermatodea_contig10740.507.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10740.507.1
Unique NamemRNA_S-dermatodea_contig10740.507.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10740.507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10740contigS-dermatodea_contig10740:316..1272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924171.5493615-CDS-S-dermatodea_contig10740:316..4371622924171.5493615-CDS-S-dermatodea_contig10740:316..437Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10740 317..437 -
1694079066.7232122-CDS-S-dermatodea_contig10740:316..4371694079066.7232122-CDS-S-dermatodea_contig10740:316..437Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10740 317..437 -
1622924171.562148-CDS-S-dermatodea_contig10740:940..12721622924171.562148-CDS-S-dermatodea_contig10740:940..1272Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10740 941..1272 -
1694079066.7315187-CDS-S-dermatodea_contig10740:940..12721694079066.7315187-CDS-S-dermatodea_contig10740:940..1272Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10740 941..1272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10740.507.1prot_S-dermatodea_contig10740.507.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10740 317..1272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10740.507.1

>prot_S-dermatodea_contig10740.507.1 ID=prot_S-dermatodea_contig10740.507.1|Name=mRNA_S-dermatodea_contig10740.507.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=151bp
GQVGGHDRCGSARAGYRGTRVSPRGSASSGRKRRHYRETNTQCSKCGKKQ
EDPKKRKRLCPSRSDCPWWVCGASNGGCEGLKAFNASAASDRKCCMHCPE
LKQIHGCNCKECRRPPRKSPGGGRRHAAPRGRGHASRWGTRMFQAHRSAA
P
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mRNA from alignment at S-dermatodea_contig10740:316..1272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10740.507.1 ID=mRNA_S-dermatodea_contig10740.507.1|Name=mRNA_S-dermatodea_contig10740.507.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=957bp|location=Sequence derived from alignment at S-dermatodea_contig10740:316..1272- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGACAAGTTGGTGGGCATGACAGATGTGGCAGTGCTAGGGCGGGCTATCG
TGGCACGCGTGTCTCTCCGCGTGGATCTGCATCCTCAGGGAGGAAACGAA
GGCACTATCGCGAAACAAACACGCAGTGCAGCAAATGCGGCAAAAAGCAG
GAGGACCCGAAGAAGCGGAAGAGGCTGTGCCCATCACGGTCAGACTGCCC
GTGGTGGGTCTGCGGCGCTAGCAACGGTGGTTGCGAGGGATTGAAGGCCT
TCAACGCATCTGCAGCCAGCGACCGCAAATGTTGCATGCACTGCCCAGAG
CTTAAACAAATACATGGCTGCAATTGCAAAGAGTGAGTCCGTGTGCAGCT
TTCAAGCATAGCAAACATATGGTACTCGTAGCTTGTATATGTATTAGTAC
CTGGTACAGTATGTATGTATGTATGTATGTATGTATGTATGTATGTGTGT
GTGTGTGTACATGTGAAAACATTGCTTGTTGTACTGTAGTAAAATAGAGC
GCTCTACAAAGTATGTATCAGATGTACGTTTGAATCAGCCAGTGGGCAGC
GACAACGAGTTATGCTCGTACACCATGACCGTCTCGTTCTTCCCCCCTGC
CAGGGTTTGCCCTGTGTGTTTCCTGGAGTACCGTTTGCTGTTGGCTACTT
GTACAACGTAGACCGTCTCGTCCTTCCACTATTTCTTTCACGTGTTACCT
GGAGCGCTGTGCTACTTGCTTGTTTGCGGATAGAAACCCTTGTTGCATAT
TTTCTCAAGAAAACCCCGACCTATCGATGCGACAGCAAGAGGGCTGCCAT
GTTTCACCAACTTGAATAACTTTGTAACCCATCAGGTGCCGAAGGCCCCC
TCGGAAAAGCCCTGGTGGGGGTAGAAGGCACGCTGCACCCAGAGGCCGAG
GGCATGCATCACGCTGGGGTACCAGAATGTTTCAGGCCCACCGCAGCGCC
GCACCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10740:316..1272-

>mRNA_S-dermatodea_contig10740.507.1 ID=mRNA_S-dermatodea_contig10740.507.1|Name=mRNA_S-dermatodea_contig10740.507.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at S-dermatodea_contig10740:316..1272- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGACAAGTTGGTGGGCATGACAGATGTGGCAGTGCTAGGGCGGGCTATCG
TGGCACGCGTGTCTCTCCGCGTGGATCTGCATCCTCAGGGAGGAAACGAA
GGCACTATCGCGAAACAAACACGCAGTGCAGCAAATGCGGCAAAAAGCAG
GAGGACCCGAAGAAGCGGAAGAGGCTGTGCCCATCACGGTCAGACTGCCC
GTGGTGGGTCTGCGGCGCTAGCAACGGTGGTTGCGAGGGATTGAAGGCCT
TCAACGCATCTGCAGCCAGCGACCGCAAATGTTGCATGCACTGCCCAGAG
CTTAAACAAATACATGGCTGCAATTGCAAAGAGGACAAGTTGGTGGGCAT
GACAGATGTGGCAGTGCTAGGGCGGGCTATCGTGGCACGCGTGTCTCTCC
GCGTGGATCTGCATCCTCAGGGAGGAAACGAAGGCACTATCGCGAAACAA
ACACGCAGTGCAGCAAATGCGGCAAAAAGCAGGAGGACCCGAAGAAGCGG
AAGAGGCTGTGCCCATCACGGTCAGACTGCCCGTGGTGGGTCTGCGGCGC
TAGCAACGGTGGTTGCGAGGGATTGAAGGCCTTCAACGCATCTGCAGCCA
GCGACCGCAAATGTTGCATGCACTGCCCAGAGCTTAAACAAATACATGGC
TGCAATTGCAAAGAGTGCCGAAGGCCCCCTCGGAAAAGCCCTGGTGGGGG
TAGAAGGCACGCTGCACCCAGAGGCCGAGGGCATGCATCACGCTGGGGTA
CCAGAATGTTTCAGGCCCACCGCAGCGCCGCACCGGTGCCGAAGGCCCCC
TCGGAAAAGCCCTGGTGGGGGTAGAAGGCACGCTGCACCCAGAGGCCGAG
GGCATGCATCACGCTGGGGTACCAGAATGTTTCAGGCCCACCGCAGCGCC
GCACCG
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