mRNA_S-dermatodea_contig10738.501.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10738.501.1
Unique NamemRNA_S-dermatodea_contig10738.501.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10738.501.1 vs. uniprot
Match: D7FPX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX3_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.210e-14
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:   43 RWGAEYEHTTLFTGGMRFSDGGKVVEDKMLNAIVEQGGFVAAFTG 177
            RWG +Y +T LF+GGM+FSDGGKVVE+KMLNA+VEQ GF+AAFTG
Sbjct:  184 RWGYKYANTPLFSGGMKFSDGGKVVENKMLNAVVEQEGFLAAFTG 228
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10738.501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPX3_ECTSI4.210e-1475.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10738contigS-dermatodea_contig10738:5959..6137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D7FPX3
EggNOG OGs2EABQ@1,2SGK3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size179
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924171.0775304-CDS-S-dermatodea_contig10738:5960..61371622924171.0775304-CDS-S-dermatodea_contig10738:5960..6137Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10738 5961..6137 -
1694079066.3333504-CDS-S-dermatodea_contig10738:5960..61371694079066.3333504-CDS-S-dermatodea_contig10738:5960..6137Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10738 5961..6137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10738.501.1prot_S-dermatodea_contig10738.501.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10738 5961..6137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10738.501.1

>prot_S-dermatodea_contig10738.501.1 ID=prot_S-dermatodea_contig10738.501.1|Name=mRNA_S-dermatodea_contig10738.501.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp
TTTAYIFLPASNQARWGAEYEHTTLFTGGMRFSDGGKVVEDKMLNAIVEQ
GGFVAAFTG
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mRNA from alignment at S-dermatodea_contig10738:5959..6137-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10738.501.1 ID=mRNA_S-dermatodea_contig10738.501.1|Name=mRNA_S-dermatodea_contig10738.501.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=179bp|location=Sequence derived from alignment at S-dermatodea_contig10738:5959..6137- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAACCACGGCGTACATTTTTCTGCCGGCGTCGAACCAGGCGAGGTGGGG
AGCGGAGTACGAGCACACGACGCTGTTCACCGGCGGCATGAGGTTCTCCG
ACGGGGGCAAGGTGGTGGAGGACAAGATGCTAAACGCGATCGTGGAGCAA
GGGGGTTTCGTTGCGGCCTTCACAGGCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10738:5959..6137-

>mRNA_S-dermatodea_contig10738.501.1 ID=mRNA_S-dermatodea_contig10738.501.1|Name=mRNA_S-dermatodea_contig10738.501.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig10738:5959..6137- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAACCACGGCGTACATTTTTCTGCCGGCGTCGAACCAGGCGAGGTGGGG
AGCGGAGTACGAGCACACGACGCTGTTCACCGGCGGCATGAGGTTCTCCG
ACGGGGGCAAGGTGGTGGAGGACAAGATGCTAAACGCGATCGTGGAGCAA
GGGGGTTTCGTTGCGGCCTTCACAGGCACAACCACGGCGTACATTTTTCT
GCCGGCGTCGAACCAGGCGAGGTGGGGAGCGGAGTACGAGCACACGACGC
TGTTCACCGGCGGCATGAGGTTCTCCGACGGGGGCAAGGTGGTGGAGGAC
AAGATGCTAAACGCGATCGTGGAGCAAGGGGGTTTCGTTGCGGCCTTCAC
AGGC
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