prot_S-dermatodea_contig9936.17864.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9936.17864.1
Unique Nameprot_S-dermatodea_contig9936.17864.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length176
Homology
BLAST of mRNA_S-dermatodea_contig9936.17864.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.570e-22
Identity = 59/178 (33.15%), Postives = 92/178 (51.69%), Query Frame = 0
Query:    1 MVREVKPDVVVGDACRWFEGMR-EKEGVSEASSLAQAVIASDARVFILECLSNLLQTTEWIDEILPALKRESYIVETAEISANQVGIPWRRKRTFVVGIKGGLATMGQLAVWKRRLEKAKEPVQKFGEFLGRRGAYFLKRGGGEGAIYSFSEPIISLNRVHIM-REKPTEGYIAHPAD 176
            ++ EV+P+V+VG+ACR ++  R       +  ++    +AS A++ ++EC +   +TT W D + P L+     VE A + A  VG+P  ++R FV+ +K                        + G FLGR G YFLKR  G+  ++SF++P I+L   HIM R  P E Y  HP D
Sbjct:  714 VLTEVRPEVLVGNACRRYDPERLGNTATHQTEAIVDTFLASRAQLLVVECPAGFARTTAWRDSLRPRLESARCSVEDALLHATDVGVPTGKQRVFVIAVK-----------------------PRPGGFLGREGCYFLKRLPGDKGVFSFAKPTITLTHGHIMGRRLPPEDYQPHPTD 868          
BLAST of mRNA_S-dermatodea_contig9936.17864.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.780e-19
Identity = 54/147 (36.73%), Postives = 84/147 (57.14%), Query Frame = 0
Query:   33 LAQAVIASDARVFILECLSNLLQTTEWIDEILPALKRESYIVETAEISANQVGIPWRRKRTFVVGIKG-GLATMG-QLAVWKRRLEKAKEPVQKFGEFLGRRGAYFLKRGGGEGAIYSFSEPIISLNRVHIM-REKPTEGYIAHPAD 176
            L Q  I+S A++ ++E  +       W   + P L+     VETA + A  VG+P  ++R FVV +K  G   +G +L  WK+ +E++   +   GE+LGR G++FLKRG     I+SF+EP +++ + HIM R+ P E Y AH  D
Sbjct:  705 LLQIFISSRAQIMVMEAPARFTGIEVWRVTLAPQLQMAGCEVETATLKATSVGVPTNKQRVFVVAVKRYGDDNLGSKLQRWKQNVERSAPSIPTVGEYLGRAGSFFLKRGALHKEIFSFAEPTVTITKDHIMARKPPVEEYQAHLKD 851          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9936.17864.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LHQ7_9PHAE6.570e-2233.15Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KNP4_9PHAE1.780e-1936.73Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150coord: 5..120
e-value: 1.3E-8
score: 36.1
IPR001525C-5 cytosine methyltransferasePFAMPF00145DNA_methylasecoord: 39..119
e-value: 6.9E-6
score: 25.6
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 39..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9936contigS-dermatodea_contig9936:2993..3520 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9936.17864.1mRNA_S-dermatodea_contig9936.17864.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9936 2987..3520 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9936.17864.1 ID=prot_S-dermatodea_contig9936.17864.1|Name=mRNA_S-dermatodea_contig9936.17864.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=176bp
MVREVKPDVVVGDACRWFEGMREKEGVSEASSLAQAVIASDARVFILECL
SNLLQTTEWIDEILPALKRESYIVETAEISANQVGIPWRRKRTFVVGIKG
GLATMGQLAVWKRRLEKAKEPVQKFGEFLGRRGAYFLKRGGGEGAIYSFS
EPIISLNRVHIMREKPTEGYIAHPAD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001525C5_MeTfrase
IPR029063SAM-dependent_MTases