mRNA_S-dermatodea_contig9936.17864.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9936.17864.1
Unique NamemRNA_S-dermatodea_contig9936.17864.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9936.17864.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.780e-22
Identity = 59/180 (32.78%), Postives = 93/180 (51.67%), Query Frame = 1 
Query:    1 LSMVREVKPDVVVGDACRWFEGMR-EKEGVSEASSLAQAVIASDARVFILECLSNLLQTTEWIDEILPALKRESYIVETAEISANQVGIPWRRKRTFVVGIKGGLATMGQLAVWKRRLEKAKEPVQKFGEFLGRRGAYFLKRGGGEGAIYSFSEPIISLNRVHIM-REKPTEGYIAHPAD 534
            + ++ EV+P+V+VG+ACR ++  R       +  ++    +AS A++ ++EC +   +TT W D + P L+     VE A + A  VG+P  ++R FV+ +K                        + G FLGR G YFLKR  G+  ++SF++P I+L   HIM R  P E Y  HP D
Sbjct:  712 MQVLTEVRPEVLVGNACRRYDPERLGNTATHQTEAIVDTFLASRAQLLVVECPAGFARTTAWRDSLRPRLESARCSVEDALLHATDVGVPTGKQRVFVIAVK-----------------------PRPGGFLGREGCYFLKRLPGDKGVFSFAKPTITLTHGHIMGRRLPPEDYQPHPTD 868
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BLAST of mRNA_S-dermatodea_contig9936.17864.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.900e-19
Identity = 54/147 (36.73%), Postives = 84/147 (57.14%), Query Frame = 1 
Query:  103 LAQAVIASDARVFILECLSNLLQTTEWIDEILPALKRESYIVETAEISANQVGIPWRRKRTFVVGIKG-GLATMG-QLAVWKRRLEKAKEPVQKFGEFLGRRGAYFLKRGGGEGAIYSFSEPIISLNRVHIM-REKPTEGYIAHPAD 534
            L Q  I+S A++ ++E  +       W   + P L+     VETA + A  VG+P  ++R FVV +K  G   +G +L  WK+ +E++   +   GE+LGR G++FLKRG     I+SF+EP +++ + HIM R+ P E Y AH  D
Sbjct:  705 LLQIFISSRAQIMVMEAPARFTGIEVWRVTLAPQLQMAGCEVETATLKATSVGVPTNKQRVFVVAVKRYGDDNLGSKLQRWKQNVERSAPSIPTVGEYLGRAGSFFLKRGALHKEIFSFAEPTVTITKDHIMARKPPVEEYQAHLKD 851
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9936.17864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LHQ7_9PHAE2.780e-2232.78Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KNP4_9PHAE1.900e-1936.73Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9936contigS-dermatodea_contig9936:2987..3520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size528
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.4697554-UTR-S-dermatodea_contig9936:2986..29921622925438.4697554-UTR-S-dermatodea_contig9936:2986..2992Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9936 2987..2992 +
1694079933.812576-UTR-S-dermatodea_contig9936:2986..29921694079933.812576-UTR-S-dermatodea_contig9936:2986..2992Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9936 2987..2992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.4830625-CDS-S-dermatodea_contig9936:2992..35201622925438.4830625-CDS-S-dermatodea_contig9936:2992..3520Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9936 2993..3520 +
1694079933.8213184-CDS-S-dermatodea_contig9936:2992..35201694079933.8213184-CDS-S-dermatodea_contig9936:2992..3520Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9936 2993..3520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9936.17864.1prot_S-dermatodea_contig9936.17864.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9936 2993..3520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9936.17864.1

>prot_S-dermatodea_contig9936.17864.1 ID=prot_S-dermatodea_contig9936.17864.1|Name=mRNA_S-dermatodea_contig9936.17864.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=176bp
MVREVKPDVVVGDACRWFEGMREKEGVSEASSLAQAVIASDARVFILECL
SNLLQTTEWIDEILPALKRESYIVETAEISANQVGIPWRRKRTFVVGIKG
GLATMGQLAVWKRRLEKAKEPVQKFGEFLGRRGAYFLKRGGGEGAIYSFS
EPIISLNRVHIMREKPTEGYIAHPAD
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mRNA from alignment at S-dermatodea_contig9936:2987..3520+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9936.17864.1 ID=mRNA_S-dermatodea_contig9936.17864.1|Name=mRNA_S-dermatodea_contig9936.17864.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig9936:2987..3520+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTAAGCATGGTAAGAGAGGTGAAGCCAGACGTGGTGGTCGGTGACGCCTG
CAGGTGGTTTGAAGGAATGCGAGAAAAAGAAGGAGTCTCCGAAGCGAGTA
GCTTAGCCCAAGCTGTCATCGCCTCAGACGCGCGAGTTTTTATACTCGAA
TGTTTGAGTAACCTTCTGCAAACGACGGAATGGATCGACGAGATTCTCCC
CGCTCTGAAACGAGAGTCATACATTGTGGAAACGGCGGAGATATCGGCGA
ACCAAGTGGGGATTCCGTGGAGGAGGAAAAGGACATTCGTGGTAGGAATC
AAGGGAGGCCTTGCCACGATGGGGCAGTTAGCCGTTTGGAAGCGGAGGTT
GGAGAAGGCAAAGGAGCCAGTCCAGAAATTCGGGGAATTTCTGGGACGAC
GAGGCGCTTACTTCCTGAAGAGAGGTGGCGGAGAGGGAGCGATTTATTCG
TTCAGCGAACCCATCATCTCTTTGAACCGTGTTCACATCATGAGGGAAAA
GCCGACCGAAGGGTACATCGCACACCCAGCGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9936:2987..3520+

>mRNA_S-dermatodea_contig9936.17864.1 ID=mRNA_S-dermatodea_contig9936.17864.1|Name=mRNA_S-dermatodea_contig9936.17864.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at S-dermatodea_contig9936:2987..3520+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTAAGAGAGGTGAAGCCAGACGTGGTGGTCGGTGACGCCTGCAGGTG
GTTTGAAGGAATGCGAGAAAAAGAAGGAGTCTCCGAAGCGAGTAGCTTAG
CCCAAGCTGTCATCGCCTCAGACGCGCGAGTTTTTATACTCGAATGTTTG
AGTAACCTTCTGCAAACGACGGAATGGATCGACGAGATTCTCCCCGCTCT
GAAACGAGAGTCATACATTGTGGAAACGGCGGAGATATCGGCGAACCAAG
TGGGGATTCCGTGGAGGAGGAAAAGGACATTCGTGGTAGGAATCAAGGGA
GGCCTTGCCACGATGGGGCAGTTAGCCGTTTGGAAGCGGAGGTTGGAGAA
GGCAAAGGAGCCAGTCCAGAAATTCGGGGAATTTCTGGGACGACGAGGCG
CTTACTTCCTGAAGAGAGGTGGCGGAGAGGGAGCGATTTATTCGTTCAGC
GAACCCATCATCTCTTTGAACCGTGTTCACATCATGAGGGAAAAGCCGAC
CGAAGGGTACATCGCACACCCAGCGGACATGGTAAGAGAGGTGAAGCCAG
ACGTGGTGGTCGGTGACGCCTGCAGGTGGTTTGAAGGAATGCGAGAAAAA
GAAGGAGTCTCCGAAGCGAGTAGCTTAGCCCAAGCTGTCATCGCCTCAGA
CGCGCGAGTTTTTATACTCGAATGTTTGAGTAACCTTCTGCAAACGACGG
AATGGATCGACGAGATTCTCCCCGCTCTGAAACGAGAGTCATACATTGTG
GAAACGGCGGAGATATCGGCGAACCAAGTGGGGATTCCGTGGAGGAGGAA
AAGGACATTCGTGGTAGGAATCAAGGGAGGCCTTGCCACGATGGGGCAGT
TAGCCGTTTGGAAGCGGAGGTTGGAGAAGGCAAAGGAGCCAGTCCAGAAA
TTCGGGGAATTTCTGGGACGACGAGGCGCTTACTTCCTGAAGAGAGGTGG
CGGAGAGGGAGCGATTTATTCGTTCAGCGAACCCATCATCTCTTTGAACC
GTGTTCACATCATGAGGGAAAAGCCGACCGAAGGGTACATCGCACACCCA
GCGGAC
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