prot_S-dermatodea_contig98298.17803.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig98298.17803.1
Unique Name	prot_S-dermatodea_contig98298.17803.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	125

Homology

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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A1L2F1V5_9PHAE (Photosystem I assembly protein Ycf3 n=58 Tax=Phaeophyceae TaxID=2870 RepID=A0A1L2F1V5_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.740e-53
Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 125
            MSRSQRNDNFIDKTFTI+ADIILKVFPASKEEK+AFFYY+DGMSAQSEGEYAEALENYYEALQLEEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXXX N NLPQALNNIAVIYHYQGVKASE
Sbjct:    1 MSRSQRNDNFIDKTFTIVADIILKVFPASKEEKEAFFYYKDGMSAQSEGEYAEALENYYEALQLEEDPYDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNLPQALNNIAVIYHYQGVKASE 125

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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A7S6U9V8_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V8_9STRA)

HSP 1 Score: 170 bits (431), Expect = 6.010e-52
Identity = 115/125 (92.00%), Postives = 122/125 (97.60%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 125
            M+RSQ+NDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDP DRSXXXXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQALNNIAVIYHYQG+KASE
Sbjct:    1 MARSQKNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPKDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXELNTNLPQALNNIAVIYHYQGIKASE 125

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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: B2XT84_HETAK (Photosystem I assembly protein Ycf3 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT84_HETAK)

HSP 1 Score: 169 bits (429), Expect = 1.370e-51
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 125
            M RSQRNDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDPYDR   XXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQALNNIAVIYHYQG+KA++
Sbjct:    1 MGRSQRNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPYDRGFIXXXXXXXXXXXXXXXXXXXXXXXXXALNSNLPQALNNIAVIYHYQGMKATK 125

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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A023HBL3_9STRA (Photosystem I assembly protein Ycf3 n=10 Tax=Ochrophyta TaxID=2696291 RepID=A0A023HBL3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.460e-51
Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 125
            M RSQRNDNFIDKTFTI+ADI+LK+ PASK+EKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQGVKAS+
Sbjct:    1 MGRSQRNDNFIDKTFTIVADILLKILPASKQEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNLNLPQALNNIAVIYHYQGVKASK 125

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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A516ZA68_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA68_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.050e-51
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 125
            M R Q+NDNFIDKTFTI+ADI+LKVFPASK+EKQAFFYYR+GMSAQSEGEYAEALENYYEALQ+EEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQG+KASE
Sbjct:    1 MGRIQKNDNFIDKTFTIIADILLKVFPASKQEKQAFFYYREGMSAQSEGEYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGIKASE 125

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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A1Z1M4W4_OSMFI (Photosystem I assembly protein Ycf3 n=1 Tax=Osmundaria fimbriata TaxID=228265 RepID=A0A1Z1M4W4_OSMFI)

HSP 1 Score: 165 bits (418), Expect = 6.450e-50
Identity = 109/125 (87.20%), Postives = 117/125 (93.60%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 125
            M RSQ+NDNFIDKTFT++ADIILK+ P SKEEKQAF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQA NNIAVIYHYQG+KA++
Sbjct:    1 MPRSQKNDNFIDKTFTVLADIILKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNANLPQAFNNIAVIYHYQGIKAAQ 125

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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: J9QSV9_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Pelagomonadales TaxID=54409 RepID=J9QSV9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 9.430e-50
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 125
            M RSQRNDNFIDKTFT++ADI+LKVFPASK+EKQAFFYYRDGMSAQ+EG+YAEALENYYEALQ+EEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQG +A E
Sbjct:    1 MGRSQRNDNFIDKTFTLLADILLKVFPASKQEKQAFFYYRDGMSAQAEGDYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGSQAIE 125

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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A1C9CH18_PALPL (Photosystem I assembly protein Ycf3 n=4 Tax=Nemaliophycidae TaxID=2045258 RepID=A0A1C9CH18_PALPL)

HSP 1 Score: 163 bits (413), Expect = 3.940e-49
Identity = 110/125 (88.00%), Postives = 115/125 (92.00%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 125
            MSRSQ+NDNFIDKTFT++ADI+LKV P SKEEK+AF YYRDGMSAQSEGEYAEALENYYEAL LEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXX LN  LPQALNNIAVIYHYQGVKASE
Sbjct:    1 MSRSQKNDNFIDKTFTVLADIVLKVLPTSKEEKEAFCYYRDGMSAQSEGEYAEALENYYEALGLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXELNTKLPQALNNIAVIYHYQGVKASE 125

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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A1G4NSV8_9FLOR (Photosystem I assembly protein Ycf3 n=3 Tax=Nemaliales TaxID=2807 RepID=A0A1G4NSV8_9FLOR)

HSP 1 Score: 162 bits (411), Expect = 8.190e-49
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 125
            M+RSQ+NDNFIDKTFT++ADI+LK+ P SKEEKQAF YYRDGMSAQSEGEYAEALENYYEAL LEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXX LN  LPQALNNIAVIYHYQG+KASE
Sbjct:    1 MARSQKNDNFIDKTFTVLADIVLKILPTSKEEKQAFCYYRDGMSAQSEGEYAEALENYYEALGLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXELNSRLPQALNNIAVIYHYQGIKASE 125

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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A1C9CAC8_9FLOR (Photosystem I assembly protein Ycf3 n=2 Tax=Thorea hispida TaxID=202687 RepID=A0A1C9CAC8_9FLOR)

HSP 1 Score: 162 bits (410), Expect = 1.030e-48
Identity = 108/125 (86.40%), Postives = 116/125 (92.80%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 125
            M+RSQ+NDNFIDKTFT++ADI+LK+ P SKEEKQAF YYRDGMSAQ+EGEYAEALENYYEAL LEEDPYDRS  XXXXXXXXXXXXXXXXXXXXXXXXX LNP LPQALNNIAVIYHYQGV+A E
Sbjct:    1 MARSQKNDNFIDKTFTVLADIVLKILPTSKEEKQAFCYYRDGMSAQAEGEYAEALENYYEALSLEEDPYDRSYIXXXXXXXXXXXXXXXXXXXXXXXXXELNPKLPQALNNIAVIYHYQGVQACE 125

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1L2F1V5_9PHAE	2.740e-53	95.20	Photosystem I assembly protein Ycf3 n=58 Tax=Phaeo...	[more]
A0A7S6U9V8_9STRA	6.010e-52	92.00	Photosystem I assembly protein Ycf3 n=1 Tax=Schizo...	[more]
B2XT84_HETAK	1.370e-51	89.60	Photosystem I assembly protein Ycf3 n=2 Tax=Hetero...	[more]
A0A023HBL3_9STRA	1.460e-51	91.20	Photosystem I assembly protein Ycf3 n=10 Tax=Ochro...	[more]
A0A516ZA68_9STRA	4.050e-51	89.60	Photosystem I assembly protein Ycf3 n=3 Tax=Dictyo...	[more]
A0A1Z1M4W4_OSMFI	6.450e-50	87.20	Photosystem I assembly protein Ycf3 n=1 Tax=Osmund...	[more]
J9QSV9_9STRA	9.430e-50	88.00	Photosystem I assembly protein Ycf3 n=3 Tax=Pelago...	[more]
A0A1C9CH18_PALPL	3.940e-49	88.00	Photosystem I assembly protein Ycf3 n=4 Tax=Nemali...	[more]
A0A1G4NSV8_9FLOR	8.190e-49	86.40	Photosystem I assembly protein Ycf3 n=3 Tax=Nemali...	[more]
A0A1C9CAC8_9FLOR	1.030e-48	86.40	Photosystem I assembly protein Ycf3 n=2 Tax=Thorea...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 35..68 e-value: 0.012 score: 24.8 coord: 72..105 e-value: 5.4E-8 score: 42.6
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 35..68 score: 9.853
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 72..105 score: 13.511
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 10..121 e-value: 1.9E-20 score: 75.2
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 31..120
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 74..104 e-value: 2.6E-11 score: 42.8
None	No IPR available	PANTHER	PTHR26312:SF145	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3	coord: 1..118
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 1..118
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 35..125 score: 22.196

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig98298	contig	S-dermatodea_contig98298:125..499 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig98298.17803.1	mRNA_S-dermatodea_contig98298.17803.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig98298 125..499 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig98298.17803.1 ID=prot_S-dermatodea_contig98298.17803.1|Name=mRNA_S-dermatodea_contig98298.17803.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGE
YAEALENYYEALQLEEDPYDRSFILYNIGLIYSSNGEYLKALEYYHQALE
LNPNLPQALNNIAVIYHYQGVKASE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom_sf
IPR001440	TPR_1
IPR013026	TPR-contain_dom