mRNA_S-dermatodea_contig98298.17803.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig98298.17803.1
Unique NamemRNA_S-dermatodea_contig98298.17803.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A1L2F1V5_9PHAE (Photosystem I assembly protein Ycf3 n=58 Tax=Phaeophyceae TaxID=2870 RepID=A0A1L2F1V5_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.740e-53
Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 375
            MSRSQRNDNFIDKTFTI+ADIILKVFPASKEEK+AFFYY+DGMSAQSEGEYAEALENYYEALQLEEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXXX N NLPQALNNIAVIYHYQGVKASE
Sbjct:    1 MSRSQRNDNFIDKTFTIVADIILKVFPASKEEKEAFFYYKDGMSAQSEGEYAEALENYYEALQLEEDPYDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNLPQALNNIAVIYHYQGVKASE 125
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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A7S6U9V8_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V8_9STRA)

HSP 1 Score: 170 bits (431), Expect = 6.010e-52
Identity = 115/125 (92.00%), Postives = 122/125 (97.60%), Query Frame = 1 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 375
            M+RSQ+NDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDP DRSXXXXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQALNNIAVIYHYQG+KASE
Sbjct:    1 MARSQKNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPKDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXELNTNLPQALNNIAVIYHYQGIKASE 125
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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: B2XT84_HETAK (Photosystem I assembly protein Ycf3 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT84_HETAK)

HSP 1 Score: 169 bits (429), Expect = 1.370e-51
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 375
            M RSQRNDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDPYDR   XXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQALNNIAVIYHYQG+KA++
Sbjct:    1 MGRSQRNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPYDRGFIXXXXXXXXXXXXXXXXXXXXXXXXXALNSNLPQALNNIAVIYHYQGMKATK 125
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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A023HBL3_9STRA (Photosystem I assembly protein Ycf3 n=10 Tax=Ochrophyta TaxID=2696291 RepID=A0A023HBL3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.460e-51
Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 375
            M RSQRNDNFIDKTFTI+ADI+LK+ PASK+EKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQGVKAS+
Sbjct:    1 MGRSQRNDNFIDKTFTIVADILLKILPASKQEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNLNLPQALNNIAVIYHYQGVKASK 125
[Close]
BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A516ZA68_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA68_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.050e-51
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 375
            M R Q+NDNFIDKTFTI+ADI+LKVFPASK+EKQAFFYYR+GMSAQSEGEYAEALENYYEALQ+EEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQG+KASE
Sbjct:    1 MGRIQKNDNFIDKTFTIIADILLKVFPASKQEKQAFFYYREGMSAQSEGEYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGIKASE 125
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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A1Z1M4W4_OSMFI (Photosystem I assembly protein Ycf3 n=1 Tax=Osmundaria fimbriata TaxID=228265 RepID=A0A1Z1M4W4_OSMFI)

HSP 1 Score: 165 bits (418), Expect = 6.450e-50
Identity = 109/125 (87.20%), Postives = 117/125 (93.60%), Query Frame = 1 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 375
            M RSQ+NDNFIDKTFT++ADIILK+ P SKEEKQAF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQA NNIAVIYHYQG+KA++
Sbjct:    1 MPRSQKNDNFIDKTFTVLADIILKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNANLPQAFNNIAVIYHYQGIKAAQ 125
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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: J9QSV9_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Pelagomonadales TaxID=54409 RepID=J9QSV9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 9.430e-50
Identity = 110/125 (88.00%), Postives = 118/125 (94.40%), Query Frame = 1 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 375
            M RSQRNDNFIDKTFT++ADI+LKVFPASK+EKQAFFYYRDGMSAQ+EG+YAEALENYYEALQ+EEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQALNNIAVIYHYQG +A E
Sbjct:    1 MGRSQRNDNFIDKTFTLLADILLKVFPASKQEKQAFFYYRDGMSAQAEGDYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGSQAIE 125
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BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A1C9CH18_PALPL (Photosystem I assembly protein Ycf3 n=4 Tax=Nemaliophycidae TaxID=2045258 RepID=A0A1C9CH18_PALPL)

HSP 1 Score: 163 bits (413), Expect = 3.940e-49
Identity = 110/125 (88.00%), Postives = 115/125 (92.00%), Query Frame = 1 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 375
            MSRSQ+NDNFIDKTFT++ADI+LKV P SKEEK+AF YYRDGMSAQSEGEYAEALENYYEAL LEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXX LN  LPQALNNIAVIYHYQGVKASE
Sbjct:    1 MSRSQKNDNFIDKTFTVLADIVLKVLPTSKEEKEAFCYYRDGMSAQSEGEYAEALENYYEALGLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXELNTKLPQALNNIAVIYHYQGVKASE 125
[Close]
BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A1G4NSV8_9FLOR (Photosystem I assembly protein Ycf3 n=3 Tax=Nemaliales TaxID=2807 RepID=A0A1G4NSV8_9FLOR)

HSP 1 Score: 162 bits (411), Expect = 8.190e-49
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 1 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 375
            M+RSQ+NDNFIDKTFT++ADI+LK+ P SKEEKQAF YYRDGMSAQSEGEYAEALENYYEAL LEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXX LN  LPQALNNIAVIYHYQG+KASE
Sbjct:    1 MARSQKNDNFIDKTFTVLADIVLKILPTSKEEKQAFCYYRDGMSAQSEGEYAEALENYYEALGLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXELNSRLPQALNNIAVIYHYQGIKASE 125
[Close]
BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Match: A0A1C9CAC8_9FLOR (Photosystem I assembly protein Ycf3 n=2 Tax=Thorea hispida TaxID=202687 RepID=A0A1C9CAC8_9FLOR)

HSP 1 Score: 162 bits (410), Expect = 1.030e-48
Identity = 108/125 (86.40%), Postives = 116/125 (92.80%), Query Frame = 1 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALNNIAVIYHYQGVKASE 375
            M+RSQ+NDNFIDKTFT++ADI+LK+ P SKEEKQAF YYRDGMSAQ+EGEYAEALENYYEAL LEEDPYDRS  XXXXXXXXXXXXXXXXXXXXXXXXX LNP LPQALNNIAVIYHYQGV+A E
Sbjct:    1 MARSQKNDNFIDKTFTVLADIVLKILPTSKEEKQAFCYYRDGMSAQAEGEYAEALENYYEALSLEEDPYDRSYIXXXXXXXXXXXXXXXXXXXXXXXXXELNPKLPQALNNIAVIYHYQGVQACE 125
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig98298.17803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L2F1V5_9PHAE2.740e-5395.20Photosystem I assembly protein Ycf3 n=58 Tax=Phaeo... [more]
A0A7S6U9V8_9STRA6.010e-5292.00Photosystem I assembly protein Ycf3 n=1 Tax=Schizo... [more]
B2XT84_HETAK1.370e-5189.60Photosystem I assembly protein Ycf3 n=2 Tax=Hetero... [more]
A0A023HBL3_9STRA1.460e-5191.20Photosystem I assembly protein Ycf3 n=10 Tax=Ochro... [more]
A0A516ZA68_9STRA4.050e-5189.60Photosystem I assembly protein Ycf3 n=3 Tax=Dictyo... [more]
A0A1Z1M4W4_OSMFI6.450e-5087.20Photosystem I assembly protein Ycf3 n=1 Tax=Osmund... [more]
J9QSV9_9STRA9.430e-5088.00Photosystem I assembly protein Ycf3 n=3 Tax=Pelago... [more]
A0A1C9CH18_PALPL3.940e-4988.00Photosystem I assembly protein Ycf3 n=4 Tax=Nemali... [more]
A0A1G4NSV8_9FLOR8.190e-4986.40Photosystem I assembly protein Ycf3 n=3 Tax=Nemali... [more]
A0A1C9CAC8_9FLOR1.030e-4886.40Photosystem I assembly protein Ycf3 n=2 Tax=Thorea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig98298contigS-dermatodea_contig98298:125..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1.2e-43
Seed eggNOG ortholog2880.D1J7B5
Preferred nameFKBPL
KEGG koko:K20097
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009579,GO:0009628,GO:0009987,GO:0015979,GO:0016043,GO:0019684,GO:0022603,GO:0022607,GO:0031647,GO:0034622,GO:0043933,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0045765,GO:0048564,GO:0050789,GO:0050793,GO:0050821,GO:0050896,GO:0051239,GO:0060688,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:1901342,GO:1905330,GO:1905553,GO:2000026
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925433.6492019-CDS-S-dermatodea_contig98298:124..4991622925433.6492019-CDS-S-dermatodea_contig98298:124..499Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig98298 125..499 +
1694079930.4318771-CDS-S-dermatodea_contig98298:124..4991694079930.4318771-CDS-S-dermatodea_contig98298:124..499Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig98298 125..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig98298.17803.1prot_S-dermatodea_contig98298.17803.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig98298 125..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig98298.17803.1

>prot_S-dermatodea_contig98298.17803.1 ID=prot_S-dermatodea_contig98298.17803.1|Name=mRNA_S-dermatodea_contig98298.17803.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGE
YAEALENYYEALQLEEDPYDRSFILYNIGLIYSSNGEYLKALEYYHQALE
LNPNLPQALNNIAVIYHYQGVKASE
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mRNA from alignment at S-dermatodea_contig98298:125..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig98298.17803.1 ID=mRNA_S-dermatodea_contig98298.17803.1|Name=mRNA_S-dermatodea_contig98298.17803.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at S-dermatodea_contig98298:125..499+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCCGTTCACAACGAAATGATAACTTCATAGATAAAACTTTTACAAT
TATGGCAGATATTATTTTAAAGGTTTTCCCAGCAAGTAAAGAAGAAAAGC
AAGCTTTTTTTTACTATAGGGATGGTATGTCTGCGCAATCTGAAGGTGAG
TACGCTGAAGCGTTAGAAAATTATTATGAAGCTTTGCAGCTTGAAGAAGA
CCCGTATGACCGGAGTTTTATTTTATATAATATTGGTCTAATCTATTCAA
GTAACGGTGAATATTTAAAAGCTTTAGAATACTACCACCAAGCACTAGAA
TTAAACCCTAATCTCCCGCAAGCGCTAAATAATATTGCTGTTATATATCA
TTATCAAGGGGTAAAAGCTTCAGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig98298:125..499+

>mRNA_S-dermatodea_contig98298.17803.1 ID=mRNA_S-dermatodea_contig98298.17803.1|Name=mRNA_S-dermatodea_contig98298.17803.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig98298:125..499+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCCGTTCACAACGAAATGATAACTTCATAGATAAAACTTTTACAAT
TATGGCAGATATTATTTTAAAGGTTTTCCCAGCAAGTAAAGAAGAAAAGC
AAGCTTTTTTTTACTATAGGGATGGTATGTCTGCGCAATCTGAAGGTGAG
TACGCTGAAGCGTTAGAAAATTATTATGAAGCTTTGCAGCTTGAAGAAGA
CCCGTATGACCGGAGTTTTATTTTATATAATATTGGTCTAATCTATTCAA
GTAACGGTGAATATTTAAAAGCTTTAGAATACTACCACCAAGCACTAGAA
TTAAACCCTAATCTCCCGCAAGCGCTAAATAATATTGCTGTTATATATCA
TTATCAAGGGGTAAAAGCTTCAGAAATGAGCCGTTCACAACGAAATGATA
ACTTCATAGATAAAACTTTTACAATTATGGCAGATATTATTTTAAAGGTT
TTCCCAGCAAGTAAAGAAGAAAAGCAAGCTTTTTTTTACTATAGGGATGG
TATGTCTGCGCAATCTGAAGGTGAGTACGCTGAAGCGTTAGAAAATTATT
ATGAAGCTTTGCAGCTTGAAGAAGACCCGTATGACCGGAGTTTTATTTTA
TATAATATTGGTCTAATCTATTCAAGTAACGGTGAATATTTAAAAGCTTT
AGAATACTACCACCAAGCACTAGAATTAAACCCTAATCTCCCGCAAGCGC
TAAATAATATTGCTGTTATATATCATTATCAAGGGGTAAAAGCTTCAGAA
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