prot_S-dermatodea_contig9813.17788.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9813.17788.1
Unique Nameprot_S-dermatodea_contig9813.17788.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length233
Homology
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 1.280e-115
Identity = 179/236 (75.85%), Postives = 193/236 (81.78%), Query Frame = 0
Query:    1 MKVLSAVGAMTACASCASAFVTPA----LTRCSTTPSSAVRMSAAVDAVEPVXXXXXXXXXXXAAVMSKSIPFLKQPANLDGMVGNIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPVDAMAAVGAGPMLQIFAFCGFLEWKFHNGKMTMDNMHEDGQVPGEFGFDPLNLSKKSASVRERYQLQEIKNGRLAMSAIGGLVHQSLLLGGGVPFHA 232
            MKV+S VGA  ACASCASAFV P+    +   S   S A+RM+  V A EP             A MS SIPFL+QP NL+GMVG+IGFDPFGFATIFP KFMREAELKHGRVAMLAVVGW+VSEVVHVPGAAYMSENPVDAMAAVG GPMLQIF FCGFLEWKFHNGKMTMDNMHEDG  PG+FGFDP+ L+KK A VRE+YQLQEIKNGRLAMSAIGGL+HQSLLLGGGVPFHA
Sbjct:    1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKALRMAEEV-AAEPEAAVEPEPVPAGPA-MSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNEPGDFGFDPMMLAKKPADVREKYQLQEIKNGRLAMSAIGGLIHQSLLLGGGVPFHA 234          
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA)

HSP 1 Score: 235 bits (600), Expect = 7.760e-76
Identity = 112/169 (66.27%), Postives = 135/169 (79.88%), Query Frame = 0
Query:   63 MSKSIPFLKQPANLDGMVGNIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPVDAMAAVGAGPMLQIFAFCGFLEWKFHNGKMTMDNMHEDGQVPGEFGFDPLNLSKKSASVRERYQLQEIKNGRLAMSAIGGLVHQSLLLGGGVPFH 231
            MSKS+PFL +P  LDG VGN  FDPF  + + P  F+RE+ELKHGR+AMLAVVG++VSE++H+PG AY + NPVDA+  VGA PMLQIFAFCGFLE  FH GKMTM +MH DGQ PG+FGFDPLN+SK  A + + YQL EIKNGRLAM AI GL+HQS++ G GVPF+
Sbjct:    1 MSKSLPFLVKPKQLDGWVGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHKGKMTMMDMHADGQTPGDFGFDPLNVSKDPAKLAQ-YQLSEIKNGRLAMMAISGLIHQSIITGHGVPFN 168          
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK)

HSP 1 Score: 199 bits (505), Expect = 1.790e-61
Identity = 101/164 (61.59%), Postives = 123/164 (75.00%), Query Frame = 0
Query:   63 MSKSIPFLKQPANLDGMVGNIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPVDAMAAVGAGPMLQIFAFCGFLEWKFHNGKMTMDNMHEDGQ-VPGEFGFDPLNLSKKSASVRERYQLQEIKNGRLAMSAIGGLVHQSLLLG 225
            MSKS+PFL  P N  GM+G+ GFDPFGF+  F  K+MREAELKHGRV+MLAVVG++VS+ VH+PG AY S NP+DA++ VG  P+ QIF FCGFLE+  + GKMTM +M ED +  PG  GFDP+NL K   S  E  QL+E++NGRLAM AIGGLVH  LL G
Sbjct:    1 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNKGKMTMLDMFEDKERKPGFLGFDPMNLGKGGPS--EEMQLKELENGRLAMCAIGGLVHHFLLFG 162          
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA)

HSP 1 Score: 184 bits (467), Expect = 5.420e-54
Identity = 93/165 (56.36%), Postives = 115/165 (69.70%), Query Frame = 0
Query:   62 VMSKSIPFLKQPANLDGMVGNIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPVDAMAAVGAGPMLQIFAFCGFLEWKFHNGKMTMDNMHEDGQ-VPGEFGFDPLNLSKKSASVRERYQLQEIKNGRLAMSAIGGLVHQSLLLG 225
            V SKS+PFL +P NLDGMVG++GFDP G A     +++REAELK+GRVAMLA +G++V E + +PG  Y   N V A   VG  P++QIF FCGFLE+  H GKMT  +M  DG+  PG FGFDPL   K   S RER  L E+KNGRLAM AIGGL+H +L+ G
Sbjct:  126 VFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGK-DPSKRERLALAELKNGRLAMIAIGGLIHHALVTG 289          
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Match: L1IG53_GUITC (Light-harvesting Chl a protein 9 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IG53_GUITC)

HSP 1 Score: 166 bits (421), Expect = 5.160e-48
Identity = 91/173 (52.60%), Postives = 118/173 (68.21%), Query Frame = 0
Query:   63 MSKSIPFLKQPANLDG-MVGNIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPV--DAMAAVGAGPMLQIFAFCGFLEWKFHNGKMTMDNMHEDGQVPGEFGFDPLNLSKKSASVRERYQLQEIKNGRLAMSAIGGLVHQSLLLGGGVPFHA 232
            MS+S+PFL +PA LDG MVG++GFDPFGF++ +  K++RE+ELKHGRV MLA +G+IV E VH+P  A  + NPV  +A   V AG + QIFAF G +E   HN KM+   M  DG+ PG FGFDPL   K +   R RY+L E+KNGRLAM    G++H S + G G P +A
Sbjct:   41 MSQSVPFLPRPAALDGKMVGDVGFDPFGFSSKYDIKWLRESELKHGRVCMLASLGYIVQEFVHLPFEA--TSNPVGSEAFYQVPAGGLWQIFAFIGAIEHFSHNFKMSGSTMFSDGRTPGNFGFDPLGFGK-NPQARARYELAELKNGRLAMLGFSGMIHGSFITGKG-PINA 209          
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK)

HSP 1 Score: 164 bits (415), Expect = 1.160e-47
Identity = 80/133 (60.15%), Postives = 100/133 (75.19%), Query Frame = 0
Query:   63 MSKSIPFLKQPANLDGMVGNIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPVDAMAAVGAGPMLQIFAFCGFLEWKFHNGKMTMDNMHEDGQ-VPGEFGFDPLNLSKKSAS 194
            MSKS+PFL  P N  GM+G+ GFDPFGF+  F  K+MREAELKHGRV+MLAVVG++VS+ VH+PG AY S NP++A++ VG  P+ QIF FCGFLE+  + GKMTM +M ED +  PG  GFDP+NL K   S
Sbjct:   45 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEFTQNKGKMTMLDMFEDKERKPGFLGFDPMNLGKGGPS 177          
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 165 bits (417), Expect = 1.540e-47
Identity = 85/169 (50.30%), Postives = 111/169 (65.68%), Query Frame = 0
Query:   61 AVMSKSIPFLKQPANLD-GMVGNIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPVDAMAAVGAGPMLQIFAFCGFLEWKFHNGKMTMDNMHEDGQVPGEFGFDPLNLSKKSASVRERYQLQEIKNGRLAMSAIGGLVHQSLLLGGGV 228
            A  S S+PFL +PAN+D  MVG  GFDP G +T   A+F++E+E+KHGR+ MLAVVG++V EVVH+PG  + ++   +A + V  G + QIF  CG  E+  H GKMT  ++  D   PG  GFDPLNL K     + ++QL EIKNGRLAM AIGG +HQ  L   GV
Sbjct:   31 AEKSASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHKGKMTYMDISADKGTPGAMGFDPLNLGKDPEKFK-KFQLNEIKNGRLAMIAIGGFIHQMWLTKQGV 198          
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Match: A0A1Z5JQG8_FISSO (Light-harvesting complex I chlorophyll a/b binding protein 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQG8_FISSO)

HSP 1 Score: 160 bits (405), Expect = 7.100e-46
Identity = 86/167 (51.50%), Postives = 117/167 (70.06%), Query Frame = 0
Query:   61 AVMSKSIPFLKQPANLDGMVGNIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPVDAMAAVGAGPMLQIFAFCGFLEWKFHNGKMTMDNMHEDG-QVPGEFGFDPLNLSK-KSASVRERYQLQEIKNGRLAMSAIGGLVHQSLLLG 225
            A MSKSIPFL  P N  G VG++GFDP GF+  F  K++RE+E+KH R AMLA +G++V + V +PG   + ++ + A AAVG  PMLQIF   G LE+  +NGK+T++NM  D  +VPG FGFDPL ++K KSA      +L+EIKNGRLAM AIGG++  +++ G
Sbjct:   30 AEMSKSIPFLTAPKNTAGWVGDVGFDPLGFSDYFDMKWLRESEIKHSRAAMLASLGFMVQQFVTLPGMPDVDDSML-APAAVGPSPMLQIFFGLGVLEFWSNNGKVTIENMFSDSSRVPGNFGFDPLGMAKGKSAEAMADMELKEIKNGRLAMCAIGGMMAHNIVTG 195          
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Match: A0A1X6NTR2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTR2_PORUM)

HSP 1 Score: 160 bits (406), Expect = 8.070e-46
Identity = 77/164 (46.95%), Postives = 108/164 (65.85%), Query Frame = 0
Query:   61 AVMSKSIPFLKQPANLDG-MVGNIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPVDAMAAVGAGPMLQIFAFCGFLEWKFHNGKMTMDNMHEDGQVPGEFGFDPLNLSKKSASVRERYQLQEIKNGRLAMSAIGGLVHQSLL 223
            A  S S+PFL QPA  DG M G++GFDP   +     K++RE ELK+GRVAMLA +G +V E VH+P   + +    DA   V AG + Q+F  CG  E+  H GK++ D+M EDG++PG FGFDPL L K + + +++ +L E+KNGRLAM  IGG++H + +
Sbjct:   32 AARSASVPFLPQPAACDGSMAGDVGFDPLNLSGFIDIKWLREGELKNGRVAMLAFLGVLVQEFVHLPSPLFANPVATDAFFQVPAGGLWQVFLACGLCEFVSHRGKLSYDDMFEDGRIPGNFGFDPLGLYKGTPAQKKKLELAEVKNGRLAMIGIGGVIHSNFI 195          
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Match: A0A7S1BY62_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BY62_9STRA)

HSP 1 Score: 160 bits (405), Expect = 8.240e-46
Identity = 85/186 (45.70%), Postives = 119/186 (63.98%), Query Frame = 0
Query:   42 VDAVEPVXXXXXXXXXXXAAVMSKSIPFLKQPANLDGMVGNIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPVDAMAAVGAGPMLQIFAFCGFLEWKFHNGKMTMDNMHED-GQVPGEFGFDPLNLSK-KSASVRERYQLQEIKNGRLAMSAIGGLVHQSLLLG 225
            V A  P            +A MS+S+PFL  P N  G VG++GFDPF F+  F  K+MREAE+KHGR +MLA +G++  + + +PG  +++++ +    AVGAGPMLQI  + G LE   + G +TM+ M ED  +VPG FGFDP+ L+  KS    E  QL+E+KNGRLAM AIGG++H + + G
Sbjct:   16 VSAFAPASVSGTYSTTTLSAEMSQSVPFLLAPKNTKGWVGDVGFDPFSFSENFDMKWMREAEIKHGRTSMLATLGFVAQQYISLPGLPHIADSNLGP-TAVGAGPMLQIVLWMGVLEVWTNKGNITMETMFEDPDRVPGAFGFDPMGLAVGKSEEEMEEMQLKELKNGRLAMLAIGGMIHHNWVTG 200          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9813.17788.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCR7_ECTSI1.280e-11575.85Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835Z4D2_9STRA7.760e-7666.27Chlorophyll a/b-binding protein domain-containing ... [more]
A0A6V1U3D5_HETAK1.790e-6161.59Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
W7TJ16_9STRA5.420e-5456.36Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
L1IG53_GUITC5.160e-4852.60Light-harvesting Chl a protein 9 n=2 Tax=Guillardi... [more]
A0A7S4DC05_HETAK1.160e-4760.15Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S0T6N2_9RHOD1.540e-4750.30Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A1Z5JQG8_FISSO7.100e-4651.50Light-harvesting complex I chlorophyll a/b binding... [more]
A0A1X6NTR2_PORUM8.070e-4646.95Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1BY62_9STRA8.240e-4645.70Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 73..221
e-value: 8.5E-41
score: 140.2
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 67..232
e-value: 3.5E-38
score: 133.3
NoneNo IPR availablePANTHERPTHR21649:SF7CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTICcoord: 12..230
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..232
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.498
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 59..227
NoneNo IPR availableTMHMMTMhelixcoord: 139..161
NoneNo IPR availableTMHMMTMhelixcoord: 107..129
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 12..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9813contigS-dermatodea_contig9813:209..5834 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9813.17788.1mRNA_S-dermatodea_contig9813.17788.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9813 209..5834 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9813.17788.1 ID=prot_S-dermatodea_contig9813.17788.1|Name=mRNA_S-dermatodea_contig9813.17788.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=233bp
MKVLSAVGAMTACASCASAFVTPALTRCSTTPSSAVRMSAAVDAVEPVAE
PPAEPVAPPAAVMSKSIPFLKQPANLDGMVGNIGFDPFGFATIFPAKFMR
EAELKHGRVAMLAVVGWIVSEVVHVPGAAYMSENPVDAMAAVGAGPMLQI
FAFCGFLEWKFHNGKMTMDNMHEDGQVPGEFGFDPLNLSKKSASVRERYQ
LQEIKNGRLAMSAIGGLVHQSLLLGGGVPFHA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR001344Chloro_AB-bd_pln