prot_S-dermatodea_contig9803.17780.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9803.17780.1
Unique Nameprot_S-dermatodea_contig9803.17780.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length378
Homology
BLAST of mRNA_S-dermatodea_contig9803.17780.1 vs. uniprot
Match: A0A6H5K8K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.330e-27
Identity = 143/428 (33.41%), Postives = 178/428 (41.59%), Query Frame = 0
Query:    5 AKCADGLKEFARGELGPAAFRILETPAPPEATSTW--GALKSSTMSAVEGPKKPAN---------------------------------------------GGAEEERAGTAVRSSERRHSDGTRDSSSGDNNSDSEQ-EAREDAGRAAAIAPFLRVDR-------HRTPASS-----------RKDGVSQRSSATKTSVNNKTTGTPTREREQRDTAAKKESLPGTAKEKEQRTAXXXXXXXXXXXXXXXXXXXXXXSGGLVREGIQDGGGSGVDEGEEGGI----------------------------DVARDVEGLIADLRTSEGGSLSRIEQLRAEVKALVEEEQWLTEGALGKGHAWETVAQLV--GESQPLRGGKGSGTNDQRLGLQRDRTSLEVATRIIQEEERLARREEELLHAAQTIL 336
            AK A GLK  AR ELGPAAF+IL TPAPPE TSTW   A+ S T+ A +   KP                                               G  EE  AG                   G+ ++D EQ EAREDAGR+AAI  FLR          H   A S           R  G +  S++ K  V+  + G          + A  +  PG+ +      A                      +      G + G G G    +EG                               VA D+EGL+ADLR  EG ++SRIE LR++ KAL EEEQWL  G+LGKGHAWE V++L    ES  L  G   GT+   LGL+ DR +LEV  R ++EE RLAR+E ELL AA TIL
Sbjct:  254 AKQAGGLKALAREELGPAAFQILATPAPPEVTSTWMSTAVASKTVRAPK--SKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGSQEEASAG------------------GGEGDTDDEQREAREDAGRSAAIRAFLRAASAGGRGADHPAMARSGGGAGARGERKRGQGAAPLSTSGKAGVSAASVGK---------SRASGKGFPGSRRRHHDDDAHERLSVRQRRGL----------TSSSTERGKEHGAGRGWAGEDEGXXXXXXXXXXXXXXXXXXXXXXXXXXXEDQSVALDMEGLVADLRAREGEAVSRIEALRSQAKALAEEEQWLATGSLGKGHAWEAVSRLGVHNESYLLGEGTNRGTHVHGLGLEADRRNLEVVNRAMEEEARLARKETELLSAASTIL 642          
BLAST of mRNA_S-dermatodea_contig9803.17780.1 vs. uniprot
Match: D8LRY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.420e-16
Identity = 129/343 (37.61%), Postives = 164/343 (47.81%), Query Frame = 0
Query:    1 RQVHAKCADGLKEFARGELGPAAFRILETPAPPEATSTWGALKSSTMSAVEGPKKPANGGAEEERAGTAVRSSERRHSDGTRDSSSGDNN------------SDSEQEA----------------REDAGRAAAIAPFLR------------------------VDRHRTPAS-----SRKDGVSQRSSATKTSVNNKTTGTPTREREQRDTAA-------KKESLPGTAKEKEQRTAXXXXXXXXXXXXXXXXXXXXXXSGGLVREGIQDGGGSGVDEGEEGGIDVARDVEGLIADLRTSEGGSLSRIEQLRAEVKALVEEEQWLTEGALGKGHAWETVAQL 279
            ++V AK A GLK  AR ELGPAAF+IL TPAPPE TSTW +   ++ +      KP+   A + +   +   S     D       GD N            ++S  EA                REDAGR+AAI+ FLR                        V+R R  A+     S K GVS  +SA K+  + K  G P   R   D  A       ++  L  ++ E+ +     XXXXXXXXXXXXXXXXXXXX                          VA D+EGL+ADLR  EG ++SRIE LR++ KAL EEEQWL  G+LGKGHAWE V++L
Sbjct:  262 KKVCAKQAGGLKALAREELGPAAFQILTTPAPPEVTSTWMSTAVASKTTKTPKPKPSRTKASKGKRSGSDEPSRSHGDDNNNQDKRGDRNDGSKTPRSSGSPAESPGEASAGXXXXXXXXXXXXXREDAGRSAAISAFLRAASAGGRGADHPSMARSGGXXXARVERKRAQAAAPLSTSGKAGVSA-ASAGKSRASGK--GFPGSRRRHHDGDAHGRLSVRQRRGLTSSSTERGKEHGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXQSVALDMEGLVADLRAREGEAVSRIEALRSQAKALAEEEQWLATGSLGKGHAWEAVSRL 600          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9803.17780.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8K0_9PHAE1.330e-2733.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY8_ECTSI3.420e-1637.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 308..335
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 376..378
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..353
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 354..375
NoneNo IPR availableTMHMMTMhelixcoord: 353..375

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9803contigS-dermatodea_contig9803:4318..7998 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9803.17780.1mRNA_S-dermatodea_contig9803.17780.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9803 4318..7998 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9803.17780.1 ID=prot_S-dermatodea_contig9803.17780.1|Name=mRNA_S-dermatodea_contig9803.17780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=378bp
RQVHAKCADGLKEFARGELGPAAFRILETPAPPEATSTWGALKSSTMSAV
EGPKKPANGGAEEERAGTAVRSSERRHSDGTRDSSSGDNNSDSEQEARED
AGRAAAIAPFLRVDRHRTPASSRKDGVSQRSSATKTSVNNKTTGTPTRER
EQRDTAAKKESLPGTAKEKEQRTARRRSREEEDEGTGNPSSRRRRRSGGL
VREGIQDGGGSGVDEGEEGGIDVARDVEGLIADLRTSEGGSLSRIEQLRA
EVKALVEEEQWLTEGALGKGHAWETVAQLVGESQPLRGGKGSGTNDQRLG
LQRDRTSLEVATRIIQEEERLARREEELLHAAQTILEEHVSEEINDVHAE
LKSASAVVLGVVGGALVSAAAAAALRSR
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