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Homology
BLAST of mRNA_S-dermatodea_contig9803.17780.1 vs. uniprot
Match: A0A6H5K8K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K0_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.330e-27 Identity = 143/428 (33.41%), Postives = 178/428 (41.59%), Query Frame = 1
Query: 13 AKCADGLKEFARGELGPAAFRILETPAPPEATSTW--GALKSSTMSAVEGPKKPAN---------------------------------------------GGAEEERAGTAVRSSERRHSDGTRDSSSGDNNSDSEQ-EAREDAGRAAAIAPFLRVDR-------HRTPASS-----------RKDGVSQRSSATKTSVNNKTTGTPTREREQRDTAAKKESLPGTAKEKEQRTAXXXXXXXXXXXXXXXXXXXXXXSGGLVREGIQDGGGSGVDEGEEGGI----------------------------DVARDVEGLIADLRTSEGGSLSRIEQLRAEVKALVEEEQWLTEGALGKGHAWETVAQLV--GESQPLRGGKGSGTNDQRLGLQRDRTSLEVATRIIQEEERLARREEELLHAAQTIL 1008
AK A GLK AR ELGPAAF+IL TPAPPE TSTW A+ S T+ A + KP G EE AG G+ ++D EQ EAREDAGR+AAI FLR H A S R G + S++ K V+ + G + A + PG+ + A + G + G G G +EG VA D+EGL+ADLR EG ++SRIE LR++ KAL EEEQWL G+LGKGHAWE V++L ES L G GT+ LGL+ DR +LEV R ++EE RLAR+E ELL AA TIL
Sbjct: 254 AKQAGGLKALAREELGPAAFQILATPAPPEVTSTWMSTAVASKTVRAPK--SKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGSQEEASAG------------------GGEGDTDDEQREAREDAGRSAAIRAFLRAASAGGRGADHPAMARSGGGAGARGERKRGQGAAPLSTSGKAGVSAASVGK---------SRASGKGFPGSRRRHHDDDAHERLSVRQRRGL----------TSSSTERGKEHGAGRGWAGEDEGXXXXXXXXXXXXXXXXXXXXXXXXXXXEDQSVALDMEGLVADLRAREGEAVSRIEALRSQAKALAEEEQWLATGSLGKGHAWEAVSRLGVHNESYLLGEGTNRGTHVHGLGLEADRRNLEVVNRAMEEEARLARKETELLSAASTIL 642
BLAST of mRNA_S-dermatodea_contig9803.17780.1 vs. uniprot
Match: D8LRY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY8_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 3.420e-16 Identity = 129/343 (37.61%), Postives = 164/343 (47.81%), Query Frame = 1
Query: 1 RQVHAKCADGLKEFARGELGPAAFRILETPAPPEATSTWGALKSSTMSAVEGPKKPANGGAEEERAGTAVRSSERRHSDGTRDSSSGDNN------------SDSEQEA----------------REDAGRAAAIAPFLR------------------------VDRHRTPAS-----SRKDGVSQRSSATKTSVNNKTTGTPTREREQRDTAA-------KKESLPGTAKEKEQRTAXXXXXXXXXXXXXXXXXXXXXXSGGLVREGIQDGGGSGVDEGEEGGIDVARDVEGLIADLRTSEGGSLSRIEQLRAEVKALVEEEQWLTEGALGKGHAWETVAQL 837
++V AK A GLK AR ELGPAAF+IL TPAPPE TSTW + ++ + KP+ A + + + S D GD N ++S EA REDAGR+AAI+ FLR V+R R A+ S K GVS +SA K+ + K G P R D A ++ L ++ E+ + XXXXXXXXXXXXXXXXXXXX VA D+EGL+ADLR EG ++SRIE LR++ KAL EEEQWL G+LGKGHAWE V++L
Sbjct: 262 KKVCAKQAGGLKALAREELGPAAFQILTTPAPPEVTSTWMSTAVASKTTKTPKPKPSRTKASKGKRSGSDEPSRSHGDDNNNQDKRGDRNDGSKTPRSSGSPAESPGEASAGXXXXXXXXXXXXXREDAGRSAAISAFLRAASAGGRGADHPSMARSGGXXXARVERKRAQAAAPLSTSGKAGVSA-ASAGKSRASGK--GFPGSRRRHHDGDAHGRLSVRQRRGLTSSSTERGKEHGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXQSVALDMEGLVADLRAREGEAVSRIEALRSQAKALAEEEQWLATGSLGKGHAWEAVSRL 600
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1134 |
| Cds size | 1134 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9803.17780.1 >prot_S-dermatodea_contig9803.17780.1 ID=prot_S-dermatodea_contig9803.17780.1|Name=mRNA_S-dermatodea_contig9803.17780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=378bp
RQVHAKCADGLKEFARGELGPAAFRILETPAPPEATSTWGALKSSTMSAV EGPKKPANGGAEEERAGTAVRSSERRHSDGTRDSSSGDNNSDSEQEARED AGRAAAIAPFLRVDRHRTPASSRKDGVSQRSSATKTSVNNKTTGTPTRER EQRDTAAKKESLPGTAKEKEQRTARRRSREEEDEGTGNPSSRRRRRSGGL VREGIQDGGGSGVDEGEEGGIDVARDVEGLIADLRTSEGGSLSRIEQLRA EVKALVEEEQWLTEGALGKGHAWETVAQLVGESQPLRGGKGSGTNDQRLG LQRDRTSLEVATRIIQEEERLARREEELLHAAQTILEEHVSEEINDVHAE LKSASAVVLGVVGGALVSAAAAAALRSR back to topmRNA from alignment at S-dermatodea_contig9803:4318..7998- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig9803.17780.1 ID=mRNA_S-dermatodea_contig9803.17780.1|Name=mRNA_S-dermatodea_contig9803.17780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3681bp|location=Sequence derived from alignment at S-dermatodea_contig9803:4318..7998- (Saccorhiza dermatodea SderLu1190fm monoicous) CGACAGGTCCACGCCAAATGCGCCGACGGGCTCAAGGAATTCGCACGGGG
AGAGCTAGGTCCCGCCGCCTTCCGTATTTTGGAAACTCCCGCTCCCCCGG
AAGCGACGTCAACGTGGGGGGCGTTAAAATCTTCAACAATGTCAGCGGTC
GAGGGGCCGAAGAAACCAGCAAATGGAGGCGCAGAAGAAGAGCGCGCCGG
CACGGCTGTTAGGAGCAGTGAGAGGAGGCATTCGGACGGGACACGTGATA
GCAGCAGTGGTGACAACAACAGCGATTCCGAACAAGAGGCCAGAGAAGAC
GCAGGGCGAGCGGCCGCGATCGCACCGTTTTTGCGAGTGGATCGTCATCG
CACCCCGGCTTCTTCGCGCAAGGACGGGGTTTCTCAGCGCAGCAGTGCAA
CAAAAACCAGCGTCAACAACAAGACGACAGGGACGCCAACAAGGGAGCGC
GAGCAACGTGATACCGCTGCCAAGAAGGAGTCGCTTCCTGGTACCGCTAA
AGAAAAGGAGCAGAGGACGGCGCGAAGACGGAGTCGCGAGGAAGAGGACG
AGGGAACGGGAAATCCTTCGTCCCGTCGGCGACGAAGGTCGGGCGGACTA
GTAAGAGAAGGCATACAAGACGGCGGAGGGAGCGGAGTGGACGAGGGCGA
GGAAGGGGGGATCGACGTCGCTCGAGACGTTGAAGGACTCATAGCAGATC
TACGGACGAGCGAGGGAGGTTCCTTGTCGAGAATAGAACAACTAAGGGCG
GAGGTAAGTTTTTGGCCGCTTCGCTTTGAGCCAGTAAACGCCAAAGGCAA
TTGGCGGTGCGTACTTGTATTTCTTTCAGCACACCTTGTCCGGTGCCACA
GCGCGAAATGGAGTTGCATCACGAACTTTCTTCCGAAATTATTGCAAAGC
GAGAGAGATTGGCGGTCTCTATACATATTAATGCCTCACATCGTGCTGTT
CGATGGTGCAGGCCCATCGGCTCGACAGCGACGGCAGTGGTTAGCTAGTC
GAGCCAAAACCTTCGCTGGGATGATCGTATGCCACCCCGTCGTTCTTTCG
GAGGCTAACTGCTTTGTACGCGCGACAAGATTGCCTCGGCAAGCCGTTAT
GCAGGCCTTCGTTGTCGAAAGAGACCCTTTCCCAGACGTATGGGCGCGAC
AGAAACCCACAAATATGATGTGTAGCATGACATTCCATATTCCATATCCA
CACCTTCCATCACTGCGCGACAACACCCTCCTGTACAAGCACTTATTCAT
TTAGGCTCCACATCACACGGATGTTGTTTTGTTTTCGCACGATTCTTCGA
TGATAGCTTGCGCGAAATACGAACCAAACGTGTGCACGTGCGCCTCCGCT
TCGGGGGTGGGTGTTCCCCCCCATTACGTTGAAGCTGCCGAGCTCGATCA
GATCCGATTGGAGTGGTGCAGTTGGTGTCATATAGCGGAAGGCCCTATTT
AGGTCTTACCGTTCTCAGTACAAATTTTATGGCGCGAGAGAGGGGTGCGC
TGAAGTAATCTTCGGTAGGAGAAAAGTGACAAAAAACGGTGAAATATTCG
GACGAAACAAACTCAGAACCGCAGTTTTCAGAGAACAAATGTTCATGTTC
CTAACCCCGGGCGCAACACCCAACTTGGATGTCGTACCTCCTTACAGGTT
AAGGCCTTAGTCGAGGAGGAGCAGTGGCTTACGGAGGGTGCTCTAGGGAA
GGGACACGCTTGGGAGACCGTCGCACAGCTGGTGGGCGAGAGTCAGCCTC
TACGGGGCGGAAAGGGCAGCGGTACCAACGATCAGCGGTGAGATTAAGCG
CCGGGCGCAATGTGGTCATGTACCAGCGTGAGTATAGAATAATTGAACGA
TTCGAAATAGCACAACTAAAACACCGCTGCGTAGCCGTAGGTGCTTAAGC
CGCCACCGATTGAGGCATAGGGGCTTGCTCAACATGAGCAGCTATTCTTA
AGCGCCTAGACACGTGCTAAATCAAATAGTAGCTTGTCGAGGGCCCACGG
TTGATTCAGGCCTACTGACGTACTAAACCATACTCGAAACCTCTGACGAT
CCTGTCCGAGGAGAGCCGTGAAAACGTGGGATTTTTGTAACCGGCTGCCC
GGTACCACGTACGGTGGGTTTCGCACATGTTTCTCTGGCATCTGACACTG
ATCACCTATGTCAATGCGTTTGCCTGCTCGGACGAATGGGTTTATCGTAC
GACTATCAGGGCAACCCCTGGGATGATAAATATTACATGGGTCGATGCGG
GCTGTATATTTAACCCTTTTGGTACTAGCCCCTAATACTAATACTAATAC
TGTTTGGAGCGCCTGTTAGCACGTAATGTGCCTGGGGAACTCCATGGACT
AGGACGCAGGAATGAGAGAGAACGGAGCGCAAGAGAAACGGGACTGTAGC
TGTCGCCTGGCACCGAGATAAGTTTTGGTCGGTTCGGAGAGCCCTATTGA
TTATTAATACTAATTTAACAGTACCAAAAGGGTCAAGAAGTTGCGACAAA
ACGGGATTCGTACAACGTGCACTTCCTAGTGCTCGCGTATGCTTTCTTCG
TACATACCACCGATCAACTGCCGTTGCGCGCCCGATTGTGATCGTTTCCG
TGCCAATGCATGCTATTGCAGCCTCGGGCTGCAGAGAGATCGGACCAGCC
TCGAGGTGGCGACCAGGATCATACAGGAGGAGGAGAGATTGGCCAGGAGG
GAAGAAGAGCTTCTTCACGCAGCTCAAACCATCTTGGTAATGATACCGCG
ATGTTGAGCGTCCTTTGAATCAGCTCCGATCACAGCTGACGACTCGCAGG
CCAAACCTAAATCATACCGTGTCGTCCGAAAATGGTAGCAATATCCCAGC
CAAACGAGGGAAGGGAGTTGACCACCTGTGAGCAAACAGCCAGCGGTTTT
CATACGCCTTTGTGGCCATGGGTTATACTATGAGGAGGATTAGACCGTGG
GAAAAACGAGCCGCTTGAGGGCTTCGACATCCTGTGCCAGCAACGCCCTC
GATAGCACCTGGAATTTTCGATCGTTAAATATGTCGTTGGAGTAAATACC
GACACCCAAGCTGTTCGCGCGGACAAGAGACGGAGGGAGGACATGGTTAT
GACGTCAGAGTGTACAATCTGATTGCCGACCTTGTGCGCGCCGATGTCGT
TGCATGTAGATTGCTGGACAGGTGCTCTACGCTTTTGCGTGCGCTTTGTA
TGTACGGCTCGGGCTGATGTAAATACTGGAACAGAACAGTAGCGCTGTCC
TCGATTGCCTCCTCGGGTTTCAAGGGGAAAGCGCCACAAACGCGCGCACC
TGCCCGCCAAAACGAACCGAACCATAGACGATTGCTTTCAAGTGCGGTAA
CATCGTGATTCAGCAACTCCTGCCGACGGATGTAACCGAAAGGTCCGACC
GCAAAAGCAATCAGAGCACACCGAACAACCGACACCTCCCTTGTGATGCC
AATTATCTGTGCAGTCGATTATCACAAACACGTCTCACGGCGCCGGCATT
TTCCCCTGTGTATTTGTTCGTGTCGTGTCTCCACAAACTGCTGTCCACAT
TTCAGGAGGAGCACGTTTCCGAGGAGATCAACGATGTGCATGCTGAACTG
AAGAGCGCGTCTGCTGTCGTGCTGGGGGTGGTTGGCGGCGCTCTGGTGTC
TGCGGCCGCGGCGGCAGCATTGAGGTCGCGT back to topCoding sequence (CDS) from alignment at S-dermatodea_contig9803:4318..7998- >mRNA_S-dermatodea_contig9803.17780.1 ID=mRNA_S-dermatodea_contig9803.17780.1|Name=mRNA_S-dermatodea_contig9803.17780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at S-dermatodea_contig9803:4318..7998- (Saccorhiza dermatodea SderLu1190fm monoicous) CGACAGGTCCACGCCAAATGCGCCGACGGGCTCAAGGAATTCGCACGGGG AGAGCTAGGTCCCGCCGCCTTCCGTATTTTGGAAACTCCCGCTCCCCCGG AAGCGACGTCAACGTGGGGGGCGTTAAAATCTTCAACAATGTCAGCGGTC GAGGGGCCGAAGAAACCAGCAAATGGAGGCGCAGAAGAAGAGCGCGCCGG CACGGCTGTTAGGAGCAGTGAGAGGAGGCATTCGGACGGGACACGTGATA GCAGCAGTGGTGACAACAACAGCGATTCCGAACAAGAGGCCAGAGAAGAC GCAGGGCGAGCGGCCGCGATCGCACCGTTTTTGCGAGTGGATCGTCATCG CACCCCGGCTTCTTCGCGCAAGGACGGGGTTTCTCAGCGCAGCAGTGCAA CAAAAACCAGCGTCAACAACAAGACGACAGGGACGCCAACAAGGGAGCGC GAGCAACGTGATACCGCTGCCAAGAAGGAGTCGCTTCCTGGTACCGCTAA AGAAAAGGAGCAGAGGACGGCGCGAAGACGGAGTCGCGAGGAAGAGGACG AGGGAACGGGAAATCCTTCGTCCCGTCGGCGACGAAGGTCGGGCGGACTA GTAAGAGAAGGCATACAAGACGGCGGAGGGAGCGGAGTGGACGAGGGCGA GGAAGGGGGGATCGACGTCGCTCGAGACGTTGAAGGACTCATAGCAGATC TACGGACGAGCGAGGGAGGTTCCTTGTCGAGAATAGAACAACTAAGGGCG GAGCGACAGGTCCACGCCAAATGCGCCGACGGGCTCAAGGAATTCGCACG GGGAGAGCTAGGTCCCGCCGCCTTCCGTATTTTGGAAACTCCCGCTCCCC CGGAAGCGACGTCAACGTGGGGGGCGTTAAAATCTTCAACAATGTCAGCG GTCGAGGGGCCGAAGAAACCAGCAAATGGAGGCGCAGAAGAAGAGCGCGC CGGCACGGCTGTTAGGAGCAGTGAGAGGAGGCATTCGGACGGGACACGTG ATAGCAGCAGTGGTGACAACAACAGCGATTCCGAACAAGAGGCCAGAGAA GACGCAGGGCGAGCGGCCGCGATCGCACCGTTTTTGCGAGTGGATCGTCA TCGCACCCCGGCTTCTTCGCGCAAGGACGGGGTTTCTCAGCGCAGCAGTG CAACAAAAACCAGCGTCAACAACAAGACGACAGGGACGCCAACAAGGGAG CGCGAGCAACGTGATACCGCTGCCAAGAAGGAGTCGCTTCCTGGTACCGC TAAAGAAAAGGAGCAGAGGACGGCGCGAAGACGGAGTCGCGAGGAAGAGG ACGAGGGAACGGGAAATCCTTCGTCCCGTCGGCGACGAAGGTCGGGCGGA CTAGTAAGAGAAGGCATACAAGACGGCGGAGGGAGCGGAGTGGACGAGGG CGAGGAAGGGGGGATCGACGTCGCTCGAGACGTTGAAGGACTCATAGCAG ATCTACGGACGAGCGAGGGAGGTTCCTTGTCGAGAATAGAACAACTAAGG GCGGAGGTTAAGGCCTTAGTCGAGGAGGAGCAGTGGCTTACGGAGGGTGC TCTAGGGAAGGGACACGCTTGGGAGACCGTCGCACAGCTGGTGGGCGAGA GTCAGCCTCTACGGGGCGGAAAGGGCAGCGGTACCAACGATCAGCGGTTA AGGCCTTAGTCGAGGAGGAGCAGTGGCTTACGGAGGGTGCTCTAGGGAAG GGACACGCTTGGGAGACCGTCGCACAGCTGGTGGGCGAGAGTCAGCCTCT ACGGGGCGGAAAGGGCAGCGGTACCAACGATCAGCGCCTCGGGCTGCAGA GAGATCGGACCAGCCTCGAGGTGGCGACCAGGATCATACAGGAGGAGGAG AGATTGGCCAGGAGGGAAGAAGAGCTTCTTCACGCAGCTCAAACCATCTT GCCTCGGGCTGCAGAGAGATCGGACCAGCCTCGAGGTGGCGACCAGGATC ATACAGGAGGAGGAGAGATTGGCCAGGAGGGAAGAAGAGCTTCTTCACGC AGCTCAAACCATCTTGGAGGAGCACGTTTCCGAGGAGATCAACGATGTGC ATGCTGAACTGAAGAGCGCGTCTGCTGTCGTGCTGGGGGTGGTTGGCGGC GCTCTGGTGTCTGCGGCCGCGGCGGCAGCATTGAGGTCGCGTGAGGAGCA CGTTTCCGAGGAGATCAACGATGTGCATGCTGAACTGAAGAGCGCGTCTG CTGTCGTGCTGGGGGTGGTTGGCGGCGCTCTGGTGTCTGCGGCCGCGGCG GCAGCATTGAGGTCGCGT back to top
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