mRNA_S-dermatodea_contig9803.17780.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9803.17780.1
Unique NamemRNA_S-dermatodea_contig9803.17780.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9803.17780.1 vs. uniprot
Match: A0A6H5K8K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.330e-27
Identity = 143/428 (33.41%), Postives = 178/428 (41.59%), Query Frame = 1
Query:   13 AKCADGLKEFARGELGPAAFRILETPAPPEATSTW--GALKSSTMSAVEGPKKPAN---------------------------------------------GGAEEERAGTAVRSSERRHSDGTRDSSSGDNNSDSEQ-EAREDAGRAAAIAPFLRVDR-------HRTPASS-----------RKDGVSQRSSATKTSVNNKTTGTPTREREQRDTAAKKESLPGTAKEKEQRTAXXXXXXXXXXXXXXXXXXXXXXSGGLVREGIQDGGGSGVDEGEEGGI----------------------------DVARDVEGLIADLRTSEGGSLSRIEQLRAEVKALVEEEQWLTEGALGKGHAWETVAQLV--GESQPLRGGKGSGTNDQRLGLQRDRTSLEVATRIIQEEERLARREEELLHAAQTIL 1008
            AK A GLK  AR ELGPAAF+IL TPAPPE TSTW   A+ S T+ A +   KP                                               G  EE  AG                   G+ ++D EQ EAREDAGR+AAI  FLR          H   A S           R  G +  S++ K  V+  + G          + A  +  PG+ +      A                      +      G + G G G    +EG                               VA D+EGL+ADLR  EG ++SRIE LR++ KAL EEEQWL  G+LGKGHAWE V++L    ES  L  G   GT+   LGL+ DR +LEV  R ++EE RLAR+E ELL AA TIL
Sbjct:  254 AKQAGGLKALAREELGPAAFQILATPAPPEVTSTWMSTAVASKTVRAPK--SKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGSQEEASAG------------------GGEGDTDDEQREAREDAGRSAAIRAFLRAASAGGRGADHPAMARSGGGAGARGERKRGQGAAPLSTSGKAGVSAASVGK---------SRASGKGFPGSRRRHHDDDAHERLSVRQRRGL----------TSSSTERGKEHGAGRGWAGEDEGXXXXXXXXXXXXXXXXXXXXXXXXXXXEDQSVALDMEGLVADLRAREGEAVSRIEALRSQAKALAEEEQWLATGSLGKGHAWEAVSRLGVHNESYLLGEGTNRGTHVHGLGLEADRRNLEVVNRAMEEEARLARKETELLSAASTIL 642          
BLAST of mRNA_S-dermatodea_contig9803.17780.1 vs. uniprot
Match: D8LRY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.420e-16
Identity = 129/343 (37.61%), Postives = 164/343 (47.81%), Query Frame = 1
Query:    1 RQVHAKCADGLKEFARGELGPAAFRILETPAPPEATSTWGALKSSTMSAVEGPKKPANGGAEEERAGTAVRSSERRHSDGTRDSSSGDNN------------SDSEQEA----------------REDAGRAAAIAPFLR------------------------VDRHRTPAS-----SRKDGVSQRSSATKTSVNNKTTGTPTREREQRDTAA-------KKESLPGTAKEKEQRTAXXXXXXXXXXXXXXXXXXXXXXSGGLVREGIQDGGGSGVDEGEEGGIDVARDVEGLIADLRTSEGGSLSRIEQLRAEVKALVEEEQWLTEGALGKGHAWETVAQL 837
            ++V AK A GLK  AR ELGPAAF+IL TPAPPE TSTW +   ++ +      KP+   A + +   +   S     D       GD N            ++S  EA                REDAGR+AAI+ FLR                        V+R R  A+     S K GVS  +SA K+  + K  G P   R   D  A       ++  L  ++ E+ +     XXXXXXXXXXXXXXXXXXXX                          VA D+EGL+ADLR  EG ++SRIE LR++ KAL EEEQWL  G+LGKGHAWE V++L
Sbjct:  262 KKVCAKQAGGLKALAREELGPAAFQILTTPAPPEVTSTWMSTAVASKTTKTPKPKPSRTKASKGKRSGSDEPSRSHGDDNNNQDKRGDRNDGSKTPRSSGSPAESPGEASAGXXXXXXXXXXXXXREDAGRSAAISAFLRAASAGGRGADHPSMARSGGXXXARVERKRAQAAAPLSTSGKAGVSA-ASAGKSRASGK--GFPGSRRRHHDGDAHGRLSVRQRRGLTSSSTERGKEHGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXQSVALDMEGLVADLRAREGEAVSRIEALRSQAKALAEEEQWLATGSLGKGHAWEAVSRL 600          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9803.17780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8K0_9PHAE1.330e-2733.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY8_ECTSI3.420e-1637.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9803contigS-dermatodea_contig9803:4318..7998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1134
Cds size1134
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9803.17780.1prot_S-dermatodea_contig9803.17780.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9803 4318..7998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.9967625-CDS-S-dermatodea_contig9803:4317..44431622925431.9967625-CDS-S-dermatodea_contig9803:4317..4443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9803 4318..4443 -
1694079929.39062-CDS-S-dermatodea_contig9803:4317..44431694079929.39062-CDS-S-dermatodea_contig9803:4317..4443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9803 4318..4443 -
1622925432.0096412-CDS-S-dermatodea_contig9803:5262..53771622925432.0096412-CDS-S-dermatodea_contig9803:5262..5377Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9803 5263..5377 -
1694079929.3991544-CDS-S-dermatodea_contig9803:5262..53771694079929.3991544-CDS-S-dermatodea_contig9803:5262..5377Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9803 5263..5377 -
1622925432.0253837-CDS-S-dermatodea_contig9803:6211..63511622925432.0253837-CDS-S-dermatodea_contig9803:6211..6351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9803 6212..6351 -
1694079929.4078681-CDS-S-dermatodea_contig9803:6211..63511694079929.4078681-CDS-S-dermatodea_contig9803:6211..6351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9803 6212..6351 -
1622925432.0402093-CDS-S-dermatodea_contig9803:7245..79981622925432.0402093-CDS-S-dermatodea_contig9803:7245..7998Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9803 7246..7998 -
1694079929.4166334-CDS-S-dermatodea_contig9803:7245..79981694079929.4166334-CDS-S-dermatodea_contig9803:7245..7998Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9803 7246..7998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9803.17780.1

>prot_S-dermatodea_contig9803.17780.1 ID=prot_S-dermatodea_contig9803.17780.1|Name=mRNA_S-dermatodea_contig9803.17780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=378bp
RQVHAKCADGLKEFARGELGPAAFRILETPAPPEATSTWGALKSSTMSAV
EGPKKPANGGAEEERAGTAVRSSERRHSDGTRDSSSGDNNSDSEQEARED
AGRAAAIAPFLRVDRHRTPASSRKDGVSQRSSATKTSVNNKTTGTPTRER
EQRDTAAKKESLPGTAKEKEQRTARRRSREEEDEGTGNPSSRRRRRSGGL
VREGIQDGGGSGVDEGEEGGIDVARDVEGLIADLRTSEGGSLSRIEQLRA
EVKALVEEEQWLTEGALGKGHAWETVAQLVGESQPLRGGKGSGTNDQRLG
LQRDRTSLEVATRIIQEEERLARREEELLHAAQTILEEHVSEEINDVHAE
LKSASAVVLGVVGGALVSAAAAAALRSR
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mRNA from alignment at S-dermatodea_contig9803:4318..7998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9803.17780.1 ID=mRNA_S-dermatodea_contig9803.17780.1|Name=mRNA_S-dermatodea_contig9803.17780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3681bp|location=Sequence derived from alignment at S-dermatodea_contig9803:4318..7998- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACAGGTCCACGCCAAATGCGCCGACGGGCTCAAGGAATTCGCACGGGG AGAGCTAGGTCCCGCCGCCTTCCGTATTTTGGAAACTCCCGCTCCCCCGG AAGCGACGTCAACGTGGGGGGCGTTAAAATCTTCAACAATGTCAGCGGTC GAGGGGCCGAAGAAACCAGCAAATGGAGGCGCAGAAGAAGAGCGCGCCGG CACGGCTGTTAGGAGCAGTGAGAGGAGGCATTCGGACGGGACACGTGATA GCAGCAGTGGTGACAACAACAGCGATTCCGAACAAGAGGCCAGAGAAGAC GCAGGGCGAGCGGCCGCGATCGCACCGTTTTTGCGAGTGGATCGTCATCG CACCCCGGCTTCTTCGCGCAAGGACGGGGTTTCTCAGCGCAGCAGTGCAA CAAAAACCAGCGTCAACAACAAGACGACAGGGACGCCAACAAGGGAGCGC GAGCAACGTGATACCGCTGCCAAGAAGGAGTCGCTTCCTGGTACCGCTAA AGAAAAGGAGCAGAGGACGGCGCGAAGACGGAGTCGCGAGGAAGAGGACG AGGGAACGGGAAATCCTTCGTCCCGTCGGCGACGAAGGTCGGGCGGACTA GTAAGAGAAGGCATACAAGACGGCGGAGGGAGCGGAGTGGACGAGGGCGA GGAAGGGGGGATCGACGTCGCTCGAGACGTTGAAGGACTCATAGCAGATC TACGGACGAGCGAGGGAGGTTCCTTGTCGAGAATAGAACAACTAAGGGCG GAGGTAAGTTTTTGGCCGCTTCGCTTTGAGCCAGTAAACGCCAAAGGCAA TTGGCGGTGCGTACTTGTATTTCTTTCAGCACACCTTGTCCGGTGCCACA GCGCGAAATGGAGTTGCATCACGAACTTTCTTCCGAAATTATTGCAAAGC GAGAGAGATTGGCGGTCTCTATACATATTAATGCCTCACATCGTGCTGTT CGATGGTGCAGGCCCATCGGCTCGACAGCGACGGCAGTGGTTAGCTAGTC GAGCCAAAACCTTCGCTGGGATGATCGTATGCCACCCCGTCGTTCTTTCG GAGGCTAACTGCTTTGTACGCGCGACAAGATTGCCTCGGCAAGCCGTTAT GCAGGCCTTCGTTGTCGAAAGAGACCCTTTCCCAGACGTATGGGCGCGAC AGAAACCCACAAATATGATGTGTAGCATGACATTCCATATTCCATATCCA CACCTTCCATCACTGCGCGACAACACCCTCCTGTACAAGCACTTATTCAT TTAGGCTCCACATCACACGGATGTTGTTTTGTTTTCGCACGATTCTTCGA TGATAGCTTGCGCGAAATACGAACCAAACGTGTGCACGTGCGCCTCCGCT TCGGGGGTGGGTGTTCCCCCCCATTACGTTGAAGCTGCCGAGCTCGATCA GATCCGATTGGAGTGGTGCAGTTGGTGTCATATAGCGGAAGGCCCTATTT AGGTCTTACCGTTCTCAGTACAAATTTTATGGCGCGAGAGAGGGGTGCGC TGAAGTAATCTTCGGTAGGAGAAAAGTGACAAAAAACGGTGAAATATTCG GACGAAACAAACTCAGAACCGCAGTTTTCAGAGAACAAATGTTCATGTTC CTAACCCCGGGCGCAACACCCAACTTGGATGTCGTACCTCCTTACAGGTT AAGGCCTTAGTCGAGGAGGAGCAGTGGCTTACGGAGGGTGCTCTAGGGAA GGGACACGCTTGGGAGACCGTCGCACAGCTGGTGGGCGAGAGTCAGCCTC TACGGGGCGGAAAGGGCAGCGGTACCAACGATCAGCGGTGAGATTAAGCG CCGGGCGCAATGTGGTCATGTACCAGCGTGAGTATAGAATAATTGAACGA TTCGAAATAGCACAACTAAAACACCGCTGCGTAGCCGTAGGTGCTTAAGC CGCCACCGATTGAGGCATAGGGGCTTGCTCAACATGAGCAGCTATTCTTA AGCGCCTAGACACGTGCTAAATCAAATAGTAGCTTGTCGAGGGCCCACGG TTGATTCAGGCCTACTGACGTACTAAACCATACTCGAAACCTCTGACGAT CCTGTCCGAGGAGAGCCGTGAAAACGTGGGATTTTTGTAACCGGCTGCCC GGTACCACGTACGGTGGGTTTCGCACATGTTTCTCTGGCATCTGACACTG ATCACCTATGTCAATGCGTTTGCCTGCTCGGACGAATGGGTTTATCGTAC GACTATCAGGGCAACCCCTGGGATGATAAATATTACATGGGTCGATGCGG GCTGTATATTTAACCCTTTTGGTACTAGCCCCTAATACTAATACTAATAC TGTTTGGAGCGCCTGTTAGCACGTAATGTGCCTGGGGAACTCCATGGACT AGGACGCAGGAATGAGAGAGAACGGAGCGCAAGAGAAACGGGACTGTAGC TGTCGCCTGGCACCGAGATAAGTTTTGGTCGGTTCGGAGAGCCCTATTGA TTATTAATACTAATTTAACAGTACCAAAAGGGTCAAGAAGTTGCGACAAA ACGGGATTCGTACAACGTGCACTTCCTAGTGCTCGCGTATGCTTTCTTCG TACATACCACCGATCAACTGCCGTTGCGCGCCCGATTGTGATCGTTTCCG TGCCAATGCATGCTATTGCAGCCTCGGGCTGCAGAGAGATCGGACCAGCC TCGAGGTGGCGACCAGGATCATACAGGAGGAGGAGAGATTGGCCAGGAGG GAAGAAGAGCTTCTTCACGCAGCTCAAACCATCTTGGTAATGATACCGCG ATGTTGAGCGTCCTTTGAATCAGCTCCGATCACAGCTGACGACTCGCAGG CCAAACCTAAATCATACCGTGTCGTCCGAAAATGGTAGCAATATCCCAGC CAAACGAGGGAAGGGAGTTGACCACCTGTGAGCAAACAGCCAGCGGTTTT CATACGCCTTTGTGGCCATGGGTTATACTATGAGGAGGATTAGACCGTGG GAAAAACGAGCCGCTTGAGGGCTTCGACATCCTGTGCCAGCAACGCCCTC GATAGCACCTGGAATTTTCGATCGTTAAATATGTCGTTGGAGTAAATACC GACACCCAAGCTGTTCGCGCGGACAAGAGACGGAGGGAGGACATGGTTAT GACGTCAGAGTGTACAATCTGATTGCCGACCTTGTGCGCGCCGATGTCGT TGCATGTAGATTGCTGGACAGGTGCTCTACGCTTTTGCGTGCGCTTTGTA TGTACGGCTCGGGCTGATGTAAATACTGGAACAGAACAGTAGCGCTGTCC TCGATTGCCTCCTCGGGTTTCAAGGGGAAAGCGCCACAAACGCGCGCACC TGCCCGCCAAAACGAACCGAACCATAGACGATTGCTTTCAAGTGCGGTAA CATCGTGATTCAGCAACTCCTGCCGACGGATGTAACCGAAAGGTCCGACC GCAAAAGCAATCAGAGCACACCGAACAACCGACACCTCCCTTGTGATGCC AATTATCTGTGCAGTCGATTATCACAAACACGTCTCACGGCGCCGGCATT TTCCCCTGTGTATTTGTTCGTGTCGTGTCTCCACAAACTGCTGTCCACAT TTCAGGAGGAGCACGTTTCCGAGGAGATCAACGATGTGCATGCTGAACTG AAGAGCGCGTCTGCTGTCGTGCTGGGGGTGGTTGGCGGCGCTCTGGTGTC TGCGGCCGCGGCGGCAGCATTGAGGTCGCGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9803:4318..7998-

>mRNA_S-dermatodea_contig9803.17780.1 ID=mRNA_S-dermatodea_contig9803.17780.1|Name=mRNA_S-dermatodea_contig9803.17780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at S-dermatodea_contig9803:4318..7998- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACAGGTCCACGCCAAATGCGCCGACGGGCTCAAGGAATTCGCACGGGG
AGAGCTAGGTCCCGCCGCCTTCCGTATTTTGGAAACTCCCGCTCCCCCGG
AAGCGACGTCAACGTGGGGGGCGTTAAAATCTTCAACAATGTCAGCGGTC
GAGGGGCCGAAGAAACCAGCAAATGGAGGCGCAGAAGAAGAGCGCGCCGG
CACGGCTGTTAGGAGCAGTGAGAGGAGGCATTCGGACGGGACACGTGATA
GCAGCAGTGGTGACAACAACAGCGATTCCGAACAAGAGGCCAGAGAAGAC
GCAGGGCGAGCGGCCGCGATCGCACCGTTTTTGCGAGTGGATCGTCATCG
CACCCCGGCTTCTTCGCGCAAGGACGGGGTTTCTCAGCGCAGCAGTGCAA
CAAAAACCAGCGTCAACAACAAGACGACAGGGACGCCAACAAGGGAGCGC
GAGCAACGTGATACCGCTGCCAAGAAGGAGTCGCTTCCTGGTACCGCTAA
AGAAAAGGAGCAGAGGACGGCGCGAAGACGGAGTCGCGAGGAAGAGGACG
AGGGAACGGGAAATCCTTCGTCCCGTCGGCGACGAAGGTCGGGCGGACTA
GTAAGAGAAGGCATACAAGACGGCGGAGGGAGCGGAGTGGACGAGGGCGA
GGAAGGGGGGATCGACGTCGCTCGAGACGTTGAAGGACTCATAGCAGATC
TACGGACGAGCGAGGGAGGTTCCTTGTCGAGAATAGAACAACTAAGGGCG
GAGCGACAGGTCCACGCCAAATGCGCCGACGGGCTCAAGGAATTCGCACG
GGGAGAGCTAGGTCCCGCCGCCTTCCGTATTTTGGAAACTCCCGCTCCCC
CGGAAGCGACGTCAACGTGGGGGGCGTTAAAATCTTCAACAATGTCAGCG
GTCGAGGGGCCGAAGAAACCAGCAAATGGAGGCGCAGAAGAAGAGCGCGC
CGGCACGGCTGTTAGGAGCAGTGAGAGGAGGCATTCGGACGGGACACGTG
ATAGCAGCAGTGGTGACAACAACAGCGATTCCGAACAAGAGGCCAGAGAA
GACGCAGGGCGAGCGGCCGCGATCGCACCGTTTTTGCGAGTGGATCGTCA
TCGCACCCCGGCTTCTTCGCGCAAGGACGGGGTTTCTCAGCGCAGCAGTG
CAACAAAAACCAGCGTCAACAACAAGACGACAGGGACGCCAACAAGGGAG
CGCGAGCAACGTGATACCGCTGCCAAGAAGGAGTCGCTTCCTGGTACCGC
TAAAGAAAAGGAGCAGAGGACGGCGCGAAGACGGAGTCGCGAGGAAGAGG
ACGAGGGAACGGGAAATCCTTCGTCCCGTCGGCGACGAAGGTCGGGCGGA
CTAGTAAGAGAAGGCATACAAGACGGCGGAGGGAGCGGAGTGGACGAGGG
CGAGGAAGGGGGGATCGACGTCGCTCGAGACGTTGAAGGACTCATAGCAG
ATCTACGGACGAGCGAGGGAGGTTCCTTGTCGAGAATAGAACAACTAAGG
GCGGAGGTTAAGGCCTTAGTCGAGGAGGAGCAGTGGCTTACGGAGGGTGC
TCTAGGGAAGGGACACGCTTGGGAGACCGTCGCACAGCTGGTGGGCGAGA
GTCAGCCTCTACGGGGCGGAAAGGGCAGCGGTACCAACGATCAGCGGTTA
AGGCCTTAGTCGAGGAGGAGCAGTGGCTTACGGAGGGTGCTCTAGGGAAG
GGACACGCTTGGGAGACCGTCGCACAGCTGGTGGGCGAGAGTCAGCCTCT
ACGGGGCGGAAAGGGCAGCGGTACCAACGATCAGCGCCTCGGGCTGCAGA
GAGATCGGACCAGCCTCGAGGTGGCGACCAGGATCATACAGGAGGAGGAG
AGATTGGCCAGGAGGGAAGAAGAGCTTCTTCACGCAGCTCAAACCATCTT
GCCTCGGGCTGCAGAGAGATCGGACCAGCCTCGAGGTGGCGACCAGGATC
ATACAGGAGGAGGAGAGATTGGCCAGGAGGGAAGAAGAGCTTCTTCACGC
AGCTCAAACCATCTTGGAGGAGCACGTTTCCGAGGAGATCAACGATGTGC
ATGCTGAACTGAAGAGCGCGTCTGCTGTCGTGCTGGGGGTGGTTGGCGGC
GCTCTGGTGTCTGCGGCCGCGGCGGCAGCATTGAGGTCGCGTGAGGAGCA
CGTTTCCGAGGAGATCAACGATGTGCATGCTGAACTGAAGAGCGCGTCTG
CTGTCGTGCTGGGGGTGGTTGGCGGCGCTCTGGTGTCTGCGGCCGCGGCG
GCAGCATTGAGGTCGCGT
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