prot_S-dermatodea_contig9798.17775.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9798.17775.1
Unique Nameprot_S-dermatodea_contig9798.17775.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length112
Homology
BLAST of mRNA_S-dermatodea_contig9798.17775.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.120e-18
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 0
Query:   18 RESLDMYNSRSGVVGLVCDLGTIEDPRIARAVSFKRRVAMSTLVVTDENVVYDFRRRGLFTGPLNFLTLRTLELEHP 94
            R S         V+GL+ DL T+ DPRIARA+S+KRR A+ST+VV ++ V++DFRRRGL+TGP+NFL L TL +++P
Sbjct:  211 RSSXXXXXXXXXVIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNP 287          
BLAST of mRNA_S-dermatodea_contig9798.17775.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.230e-10
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 0
Query:   30 VVGLVCDLGTIEDPRIARAVSFKRRVAMSTLVVTDENVVYDFRRRGLFTGPLNFLTLRTLELEHPGV 96
            V+GL+ DL T+ DPRIARA+SFK R  +S +VV ++NV    RR GL+T  + FL+L  L  E P V
Sbjct:  323 VIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQESPSV 389          
BLAST of mRNA_S-dermatodea_contig9798.17775.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-7
Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 0
Query:   52 KRRVAMSTLVVTDENVVYDFRRRGLFTGPLNFLTLRTLELEHP 94
            +RR A+ST+VV ++ V++DFRRRG +TGP+NFL L TL +++P
Sbjct:  148 QRRAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNP 190          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9798.17775.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1J4_9PHAE1.120e-1854.55F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKJ2_ECTSI1.230e-1050.75F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK0_ECTSI1.070e-755.81F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036277SMCs flexible hinge superfamilySUPERFAMILY75553Smc hinge domaincoord: 12..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9798contigS-dermatodea_contig9798:1433..1768 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9798.17775.1mRNA_S-dermatodea_contig9798.17775.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9798 1415..1768 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9798.17775.1 ID=prot_S-dermatodea_contig9798.17775.1|Name=mRNA_S-dermatodea_contig9798.17775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MHRAIDESGNLRATSRVRESLDMYNSRSGVVGLVCDLGTIEDPRIARAVS
FKRRVAMSTLVVTDENVVYDFRRRGLFTGPLNFLTLRTLELEHPGVAAGL
GGGGVGGLEALL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036277SMC_hinge_sf