mRNA_S-dermatodea_contig9798.17775.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9798.17775.1
Unique NamemRNA_S-dermatodea_contig9798.17775.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9798.17775.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.350e-27
Identity = 64/138 (46.38%), Postives = 84/138 (60.87%), Query Frame = 1 
Query:    1 QYIKNVMHRAIDESGNLRATSRVRESLDMY-----------------------------NSRSG---------VVGLVCDLGTIEDPRIARAVSFKRRVAMSTLVVTDENVVYDFRRRGLFTGPLNFLTLRTLELEHP 300
            QY+KNVM RAIDE GNLRA  R+RESLD +                             + RS          V+GL+ DL T+ DPRIARA+S+KRR A+ST+VV ++ V++DFRRRGL+TGP+NFL L TL +++P
Sbjct:  150 QYVKNVMRRAIDEVGNLRANHRLRESLDSFTWPIDWPRGNATTSGTIYSAISNTFGGGIDGRSSXXXXXXXXXVIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNP 287
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BLAST of mRNA_S-dermatodea_contig9798.17775.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.520e-10
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:  106 VVGLVCDLGTIEDPRIARAVSFKRRVAMSTLVVTDENVVYDFRRRGLFTGPLNFLTLRTLELEHPGV 306
            V+GL+ DL T+ DPRIARA+SFK R  +S +VV ++NV    RR GL+T  + FL+L  L  E P V
Sbjct:  323 VIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQESPSV 389
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BLAST of mRNA_S-dermatodea_contig9798.17775.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.300e-7
Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:  172 KRRVAMSTLVVTDENVVYDFRRRGLFTGPLNFLTLRTLELEHP 300
            +RR A+ST+VV ++ V++DFRRRG +TGP+NFL L TL +++P
Sbjct:  148 QRRAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNP 190
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9798.17775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1J4_9PHAE4.350e-2746.38F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKJ2_ECTSI1.520e-1050.75F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK0_ECTSI1.300e-755.81F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9798contigS-dermatodea_contig9798:1415..1768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.809147-UTR-S-dermatodea_contig9798:1414..14321622925431.809147-UTR-S-dermatodea_contig9798:1414..1432Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9798 1415..1432 +
1694079929.303643-UTR-S-dermatodea_contig9798:1414..14321694079929.303643-UTR-S-dermatodea_contig9798:1414..1432Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9798 1415..1432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.8191705-CDS-S-dermatodea_contig9798:1432..17681622925431.8191705-CDS-S-dermatodea_contig9798:1432..1768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9798 1433..1768 +
1694079929.3140233-CDS-S-dermatodea_contig9798:1432..17681694079929.3140233-CDS-S-dermatodea_contig9798:1432..1768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9798 1433..1768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9798.17775.1prot_S-dermatodea_contig9798.17775.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9798 1433..1768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9798.17775.1

>prot_S-dermatodea_contig9798.17775.1 ID=prot_S-dermatodea_contig9798.17775.1|Name=mRNA_S-dermatodea_contig9798.17775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MHRAIDESGNLRATSRVRESLDMYNSRSGVVGLVCDLGTIEDPRIARAVS
FKRRVAMSTLVVTDENVVYDFRRRGLFTGPLNFLTLRTLELEHPGVAAGL
GGGGVGGLEALL
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mRNA from alignment at S-dermatodea_contig9798:1415..1768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9798.17775.1 ID=mRNA_S-dermatodea_contig9798.17775.1|Name=mRNA_S-dermatodea_contig9798.17775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig9798:1415..1768+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAATACATCAAGAACGTCATGCACCGCGCAATCGACGAGTCGGGAAACTT
GCGCGCCACGAGCCGCGTCCGGGAAAGCCTCGATATGTACAACTCCCGGA
GTGGCGTCGTAGGCCTTGTGTGCGACCTTGGCACCATCGAAGACCCCCGC
ATCGCTCGCGCGGTGTCCTTCAAGCGCCGCGTCGCGATGTCCACCTTGGT
TGTCACCGACGAAAACGTTGTCTACGATTTTCGCCGCCGCGGTCTGTTCA
CCGGGCCGCTGAACTTCCTGACCCTCCGCACTCTCGAGCTCGAACATCCA
GGCGTTGCCGCAGGGCTTGGCGGCGGGGGTGTTGGCGGCCTGGAGGCTTT
GCTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9798:1415..1768+

>mRNA_S-dermatodea_contig9798.17775.1 ID=mRNA_S-dermatodea_contig9798.17775.1|Name=mRNA_S-dermatodea_contig9798.17775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig9798:1415..1768+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACCGCGCAATCGACGAGTCGGGAAACTTGCGCGCCACGAGCCGCGT
CCGGGAAAGCCTCGATATGTACAACTCCCGGAGTGGCGTCGTAGGCCTTG
TGTGCGACCTTGGCACCATCGAAGACCCCCGCATCGCTCGCGCGGTGTCC
TTCAAGCGCCGCGTCGCGATGTCCACCTTGGTTGTCACCGACGAAAACGT
TGTCTACGATTTTCGCCGCCGCGGTCTGTTCACCGGGCCGCTGAACTTCC
TGACCCTCCGCACTCTCGAGCTCGAACATCCAGGCGTTGCCGCAGGGCTT
GGCGGCGGGGGTGTTGGCGGCCTGGAGGCTTTGCTAATGCACCGCGCAAT
CGACGAGTCGGGAAACTTGCGCGCCACGAGCCGCGTCCGGGAAAGCCTCG
ATATGTACAACTCCCGGAGTGGCGTCGTAGGCCTTGTGTGCGACCTTGGC
ACCATCGAAGACCCCCGCATCGCTCGCGCGGTGTCCTTCAAGCGCCGCGT
CGCGATGTCCACCTTGGTTGTCACCGACGAAAACGTTGTCTACGATTTTC
GCCGCCGCGGTCTGTTCACCGGGCCGCTGAACTTCCTGACCCTCCGCACT
CTCGAGCTCGAACATCCAGGCGTTGCCGCAGGGCTTGGCGGCGGGGGTGT
TGGCGGCCTGGAGGCTTTGCTA
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