prot_S-dermatodea_contig9796.17773.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9796.17773.1
Unique Nameprot_S-dermatodea_contig9796.17773.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length66
Homology
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BLAST of mRNA_S-dermatodea_contig9796.17773.1 vs. uniprot
Match: A0A6H5L1Z3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.590e-20
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 0 
Query:    1 MRDALGLNDDASVVSMSPMGSVSSFGG--MGTWKEERTRERRRKAELKAKLEDLPSPQYEYELVAPEV 66
            MRD LGLNDDAS+ SMSPMGSVSSFGG   G+ KEE+ RERRRK EL+AKL  LP+PQYEYELVAP+V
Sbjct:  453 MRDELGLNDDASMASMSPMGSVSSFGGGPAGS-KEEKARERRRKEELRAKLSGLPAPQYEYELVAPDV 519
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BLAST of mRNA_S-dermatodea_contig9796.17773.1 vs. uniprot
Match: D7FTA5_ECTSI (Myb_Cef domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.340e-18
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 0 
Query:    5 LGLNDDASVVSMSPMGSVSSFGG--MGTWKEERTRERRRKAELKAKLEDLPSPQYEYELVAPEV 66
            LGLNDDAS+ SMSPMGSVSSFGG  +G+ KEER RERR+K EL+AKL  LP+PQYEYELVAP+V
Sbjct:  202 LGLNDDASMASMSPMGSVSSFGGGPVGS-KEERARERRKKEELRAKLSGLPAPQYEYELVAPDV 264
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9796.17773.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1Z3_9PHAE8.590e-2076.47MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FTA5_ECTSI2.340e-1876.56Myb_Cef domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1PFAMPF11831Myb_Cefcoord: 1..65
e-value: 6.3E-9
score: 35.7
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9796contigS-dermatodea_contig9796:4303..6644 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9796.17773.1mRNA_S-dermatodea_contig9796.17773.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9796 4303..6656 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9796.17773.1 ID=prot_S-dermatodea_contig9796.17773.1|Name=mRNA_S-dermatodea_contig9796.17773.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
MRDALGLNDDASVVSMSPMGSVSSFGGMGTWKEERTRERRRKAELKAKLE
DLPSPQYEYELVAPEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021786Cdc5p/Cef1