mRNA_S-dermatodea_contig9796.17773.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9796.17773.1
Unique NamemRNA_S-dermatodea_contig9796.17773.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9796.17773.1 vs. uniprot
Match: A0A6H5L1Z3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.140e-20
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:   13 MRDALGLNDDASVVSMSPMGSVSSFGG--MGTWKEERTRERRRKAELKAKLEDLPSPQYEYELVAPEV 210
            MRD LGLNDDAS+ SMSPMGSVSSFGG   G+ KEE+ RERRRK EL+AKL  LP+PQYEYELVAP+V
Sbjct:  453 MRDELGLNDDASMASMSPMGSVSSFGGGPAGS-KEEKARERRRKEELRAKLSGLPAPQYEYELVAPDV 519
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BLAST of mRNA_S-dermatodea_contig9796.17773.1 vs. uniprot
Match: D7FTA5_ECTSI (Myb_Cef domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.750e-19
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:   25 LGLNDDASVVSMSPMGSVSSFGG--MGTWKEERTRERRRKAELKAKLEDLPSPQYEYELVAPEV 210
            LGLNDDAS+ SMSPMGSVSSFGG  +G+ KEER RERR+K EL+AKL  LP+PQYEYELVAP+V
Sbjct:  202 LGLNDDASMASMSPMGSVSSFGGGPVGS-KEERARERRKKEELRAKLSGLPAPQYEYELVAPDV 264
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9796.17773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1Z3_9PHAE2.140e-2076.47MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FTA5_ECTSI3.750e-1976.56Myb_Cef domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9796contigS-dermatodea_contig9796:4303..6656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2e-15
Seed eggNOG ortholog2880.D7FTA5
Preferred nameCEF1
KEGG koko:K12860
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
GOsGO:0000018,GO:0000019,GO:0000228,GO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000974,GO:0000981,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003691,GO:0003697,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006282,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007568,GO:0007569,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0019219,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031627,GO:0031848,GO:0031974,GO:0031981,GO:0032069,GO:0032074,GO:0032200,GO:0032204,GO:0032205,GO:0032207,GO:0032208,GO:0032210,GO:0032211,GO:0032213,GO:0032214,GO:0032502,GO:0032768,GO:0032770,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033262,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034622,GO:0034641,GO:0042162,GO:0042592,GO:0042802,GO:0042803,GO:0043047,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045292,GO:0045738,GO:0045786,GO:0045910,GO:0045934,GO:0045950,GO:0046483,GO:0046983,GO:0048239,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050999,GO:0051000,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051276,GO:0051336,GO:0051341,GO:0051346,GO:0051353,GO:0051641,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061820,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070727,GO:0071006,GO:0071012,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0072695,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090342,GO:0090344,GO:0090398,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098847,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902576,GO:1903506,GO:1903516,GO:1903517,GO:1903770,GO:1903824,GO:1904353,GO:1904354,GO:1904356,GO:1904357,GO:1904429,GO:1904430,GO:1904533,GO:1904534,GO:1905777,GO:1905778,GO:1905838,GO:1905839,GO:1990904,GO:2000104,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000772,GO:2000773,GO:2001020,GO:2001021,GO:2001141,GO:2001251
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0050@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF3351
Ec32 orthologEc-13_003870.1
Exons2
Model size210
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9796.17773.1prot_S-dermatodea_contig9796.17773.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9796 4303..6644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.6783936-CDS-S-dermatodea_contig9796:4302..44881622925431.6783936-CDS-S-dermatodea_contig9796:4302..4488Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9796 4303..4488 -
1694079929.2379775-CDS-S-dermatodea_contig9796:4302..44881694079929.2379775-CDS-S-dermatodea_contig9796:4302..4488Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9796 4303..4488 -
1622925431.6903672-CDS-S-dermatodea_contig9796:6632..66441622925431.6903672-CDS-S-dermatodea_contig9796:6632..6644Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9796 6633..6644 -
1694079929.248994-CDS-S-dermatodea_contig9796:6632..66441694079929.248994-CDS-S-dermatodea_contig9796:6632..6644Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9796 6633..6644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925431.7077367-UTR-S-dermatodea_contig9796:6644..66561622925431.7077367-UTR-S-dermatodea_contig9796:6644..6656Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9796 6645..6656 -
1694079929.26643-UTR-S-dermatodea_contig9796:6644..66561694079929.26643-UTR-S-dermatodea_contig9796:6644..6656Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9796 6645..6656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9796.17773.1

>prot_S-dermatodea_contig9796.17773.1 ID=prot_S-dermatodea_contig9796.17773.1|Name=mRNA_S-dermatodea_contig9796.17773.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
MRDALGLNDDASVVSMSPMGSVSSFGGMGTWKEERTRERRRKAELKAKLE
DLPSPQYEYELVAPEV
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mRNA from alignment at S-dermatodea_contig9796:4303..6656-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9796.17773.1 ID=mRNA_S-dermatodea_contig9796.17773.1|Name=mRNA_S-dermatodea_contig9796.17773.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2354bp|location=Sequence derived from alignment at S-dermatodea_contig9796:4303..6656- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAGACACCCCCATGAGGGACGCGGTGAGATTTTGGTGTTTTGGGTGTTC
GGTCAAGAAAATGTTGAGTTTCGGCAAAAGCAAATGTGCGCCCTCAAATT
ATTATCTGCACACCGGTTACTGGTTTCAAAAATACGCGTGCATTATTGTC
AATGAGTGGTTTTTCTCCACGGATTTCAAAATACACGTTGAGGCTGTGTA
CCTGATTGCATACCCCTGCCCCAGATTATACAGATAATTACACTACACGA
CACTGCAATATCCGTTCTTGAATATTTTATGTTCAAGGATTTTTATTGTT
AATTCACATGGGCAGGTACGGGAATGGCTATGTGGCTACTCCCGTGAGGT
GTGTGAACCGGCGAAATTTCAGAAACATGTTAAAGGTGGTTATTGTAGTG
CACTGTACTGTAGACGTGAAACCTGTGTACTTTACGAATGTACAACAGTG
TACAGTGAATTCTAGTTATACCTGGCTGTATTGGTGTTGAAACCACACTT
CTTTTTTGAGTACAATCAGTGGTGCATACCGGATTAAAAAATGCACGTAG
GCTGTGTACCTGATCGTATACCCCTGTCCGAAATTACACGTACGCTTACA
CTCTGAATACACAACAATCTTCGCATTTGAATACGTACTGCTACAAGGCC
TATCGATTTGGCATTAAGGCCGAGTCGAAATCGCAATTTACAGACGTTCA
AAGCGCTATTTGTTTATTCATAAAATTCACTAATATCTGTAACGATGCAT
TTGTTTGTCTCGCCGTTGATCCGCCACATATAATTTCCCCATAAATACGG
GCTCAGTTCCAAAAGCGGTACTAAGTGTTCACGTAAATTGCTTGCTGCAC
CCCAAAAAATAGGTTGCTTTCAAAGGGATCAATAGCTGGGGTCCCGCCTT
GTGTAGAAGGAACATGGTACAAGCTACTCCAATTGGTTGTATGTAATTCA
TTATGTTACAGGATGATGATCCTAGCGTCTTTGTCCTCCTGAGCGACGTC
CTTGTATTGTAGCTTTGATGTGCTTGGTGAGCCAAAAAACTTGTTTCCGT
CTCTTCTACTTTATACGTTTGTCGTATCGATGTGTTTTTGTTGATTTATT
TAACCGTTCAACCCCTTCTTTGTCTAGTTGTTGTGGAATAGCCACGCAAT
ACAACAGCGCTTCTCATACCGGATGTATAATGTGCTACAGTACAGCCCCC
CTGGTCTATGTCCGTTTTAGATATGACATGAGTTTACCGCAAGTACCCCC
CCCCCCCACGTTAAACTGAGACCTACGAACCCCCTGCCTCCGAGGTTCGA
GGTGGGGTTAGTCGAGGTAGGATTGGCTCTTGTGGCGTGGGGCTGTAAAA
CTGCTCTTTATAGTGCATGAGGTGGTTCATGCCGTATGCCGTTGTCCTGT
GAGCTCGAAGACCTCGGTCGAACAGTTTCGTCTCTCCCCGAAGGGGCGAA
GCGCATCACATCCTTTATGATACCTGCTGAACATTGGAATGTTCGAACGC
CCTAGAGCAACCATTGACTTATGTGTGGCACTCTTCCAGGAGTACTTATA
TGAGCAGATTATAGTCTGAGTGTATCACACATAGACCGTCGTGTATGCTG
TGTGCGTGCGGCGCTTTTGCGTTCGCACGGAGATCAAAGTTCCTTTGCCG
TACTTCTTTTATAGTTACGCCTACATACTGAACTTGCAACATTTGGTTGT
ACGGCATGTCTATTCCACCCATGGCATATCGTTCGGGGTCGCAAACACAA
GGACTATGACCAGCAGCTGATATCATCCTTGTGAAGCACATACCGCCCGG
CCACGACCCAGCATGTTACTCCGTGTTGGCATTGTTGGGACGCGTGGTCT
TTGACCGTTTGGATACGGCATGCGTTTTATATATGTACACCTTCCCCCCC
CCTATCCCCCGCGCGCGCCACCCCCCGGCCTTGCTTCCAAAACACACACT
ACAGTACACTGTACTTTGCTTCATTGGTTGATACGTATACAAGTAACGGA
TCGGCATAATCCGACTCGACTTGCGGTGAGATGTGATATAATAGCAAAGT
ATCAAGGGATAATTAAGGGAGAAACAACTACCATCATGTCTTCTTCTTCA
AGGTAACATTCCCTGCTGCCACTGTAACGGCGCAAGTCTGTACATCTCTC
ACCATTGATCCGCCACAGCTGGGACTCAACGATGACGCCAGCGTGGTCAG
CATGTCCCCGATGGGGAGCGTGTCCTCCTTCGGGGGCATGGGCACATGGA
AAGAGGAGAGGACTCGGGAACGTCGTCGCAAGGCGGAGTTGAAGGCTAAG
CTTGAAGACCTGCCCTCCCCGCAGTACGAGTACGAGCTGGTTGCTCCCGA
GGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9796:4303..6656-

>mRNA_S-dermatodea_contig9796.17773.1 ID=mRNA_S-dermatodea_contig9796.17773.1|Name=mRNA_S-dermatodea_contig9796.17773.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at S-dermatodea_contig9796:4303..6656- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGACGCGATGAGGGACGCGCTGGGACTCAACGATGACGCCAGCGT
GGTCAGCATGTCCCCGATGGGGAGCGTGTCCTCCTTCGGGGGCATGGGCA
CATGGAAAGAGGAGAGGACTCGGGAACGTCGTCGCAAGGCGGAGTTGAAG
GCTAAGCTTGAAGACCTGCCCTCCCCGCAGTACGAGTACGAGCTGGTTGC
TCCCGAGGTGCTGGGACTCAACGATGACGCCAGCGTGGTCAGCATGTCCC
CGATGGGGAGCGTGTCCTCCTTCGGGGGCATGGGCACATGGAAAGAGGAG
AGGACTCGGGAACGTCGTCGCAAGGCGGAGTTGAAGGCTAAGCTTGAAGA
CCTGCCCTCCCCGCAGTACGAGTACGAGCTGGTTGCTCCCGAGGTG
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