prot_S-dermatodea_contig97719.17753.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig97719.17753.1
Unique Nameprot_S-dermatodea_contig97719.17753.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length44
Homology
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BLAST of mRNA_S-dermatodea_contig97719.17753.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.410e-13
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 0 
Query:    1 PTAELRAAYRALKRAAERDGDEVTRSHARSGLSCLDVAIRGQRF 44
            P AELR AYRALKRAAE D DEVTRSHAR+GL CLD AIRGQ F
Sbjct: 1429 PAAELRVAYRALKRAAESDRDEVTRSHARNGLGCLDAAIRGQLF 1472
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BLAST of mRNA_S-dermatodea_contig97719.17753.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.300e-11
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 0 
Query:    1 PTAELRAAYRALKRAAERDGDEVTRSHARSGLSCLDVAIRGQRF 44
            P AELR AYRALKRAA  D DE+TRSHAR+GL  LD AIRGQ F
Sbjct: 1382 PAAELRLAYRALKRAAGSDRDEITRSHARNGLGYLDAAIRGQLF 1425
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97719.17753.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHX3_ECTSI1.410e-1381.82RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JPL2_9PHAE7.300e-1175.00RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019414RNA polymerase II assembly factor Rtp1, C-terminal domain 2PFAMPF10304RTP1_C2coord: 9..32
e-value: 2.2E-5
score: 24.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97719contigS-dermatodea_contig97719:127..258 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97719.17753.1mRNA_S-dermatodea_contig97719.17753.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig97719 127..258 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig97719.17753.1 ID=prot_S-dermatodea_contig97719.17753.1|Name=mRNA_S-dermatodea_contig97719.17753.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
PTAELRAAYRALKRAAERDGDEVTRSHARSGLSCLDVAIRGQRF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019414Rtp1_C2