mRNA_S-dermatodea_contig97719.17753.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig97719.17753.1
Unique NamemRNA_S-dermatodea_contig97719.17753.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig97719.17753.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.410e-13
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 PTAELRAAYRALKRAAERDGDEVTRSHARSGLSCLDVAIRGQRF 132
            P AELR AYRALKRAAE D DEVTRSHAR+GL CLD AIRGQ F
Sbjct: 1429 PAAELRVAYRALKRAAESDRDEVTRSHARNGLGCLDAAIRGQLF 1472
[Close]
BLAST of mRNA_S-dermatodea_contig97719.17753.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.300e-11
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 PTAELRAAYRALKRAAERDGDEVTRSHARSGLSCLDVAIRGQRF 132
            P AELR AYRALKRAA  D DE+TRSHAR+GL  LD AIRGQ F
Sbjct: 1382 PAAELRLAYRALKRAAGSDRDEITRSHARNGLGYLDAAIRGQLF 1425
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97719.17753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHX3_ECTSI1.410e-1381.82RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JPL2_9PHAE7.300e-1175.00RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97719contigS-dermatodea_contig97719:127..258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue5.9e-11
Seed eggNOG ortholog2880.D7FHX3
Preferred nameTANGO6
KEGG rclassRC00961
KEGG koko:K01763,ko:K08489
KEGG ReactionR03599
KEGG Pathwayko00450,ko01100,ko04130,map00450,map01100,map04130
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0032940,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594
EggNOG free text desc.protein transport
EggNOG OGsKOG4653@1,KOG4653@2759
EC4.4.1.16
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925430.3702023-CDS-S-dermatodea_contig97719:126..2581622925430.3702023-CDS-S-dermatodea_contig97719:126..258Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97719 127..258 -
1694079928.4232328-CDS-S-dermatodea_contig97719:126..2581694079928.4232328-CDS-S-dermatodea_contig97719:126..258Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97719 127..258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97719.17753.1prot_S-dermatodea_contig97719.17753.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig97719 127..258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig97719.17753.1

>prot_S-dermatodea_contig97719.17753.1 ID=prot_S-dermatodea_contig97719.17753.1|Name=mRNA_S-dermatodea_contig97719.17753.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
PTAELRAAYRALKRAAERDGDEVTRSHARSGLSCLDVAIRGQRF
back to top

mRNA from alignment at S-dermatodea_contig97719:127..258-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig97719.17753.1 ID=mRNA_S-dermatodea_contig97719.17753.1|Name=mRNA_S-dermatodea_contig97719.17753.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at S-dermatodea_contig97719:127..258- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCACGGCAGAACTGCGCGCCGCTTACCGAGCCCTCAAACGCGCGGCCGA
GAGGGACGGGGACGAGGTCACGCGATCCCACGCCAGAAGTGGCCTGAGTT
GTCTCGACGTCGCCATTCGCGGCCAACGTTTT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig97719:127..258-

>mRNA_S-dermatodea_contig97719.17753.1 ID=mRNA_S-dermatodea_contig97719.17753.1|Name=mRNA_S-dermatodea_contig97719.17753.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig97719:127..258- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCACGGCAGAACTGCGCGCCGCTTACCGAGCCCTCAAACGCGCGGCCGA
GAGGGACGGGGACGAGGTCACGCGATCCCACGCCAGAAGTGGCCTGAGTT
GTCTCGACGTCGCCATTCGCGGCCAACGTTTTCCCACGGCAGAACTGCGC
GCCGCTTACCGAGCCCTCAAACGCGCGGCCGAGAGGGACGGGGACGAGGT
CACGCGATCCCACGCCAGAAGTGGCCTGAGTTGTCTCGACGTCGCCATTC
GCGGCCAACGTTTT
back to top