prot_S-dermatodea_contig9759.17741.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9759.17741.1
Unique Nameprot_S-dermatodea_contig9759.17741.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length207
Homology
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BLAST of mRNA_S-dermatodea_contig9759.17741.1 vs. uniprot
Match: D8LNL3_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL3_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 2.420e-66
Identity = 99/199 (49.75%), Postives = 148/199 (74.37%), Query Frame = 0 
Query:    1 MTTASSRALSGWVEKENYGLVSKFTPENFSRMGSMGKLMVLGIIDPAGEATPAFKQEFDKVASGLGLRHQDKLVFGTMDGVQLRGFAESLRIFDFRDLPRVVVLDMPEDTLYAVGNLRLEAGEMEAFLMDVLSGGIPGQSSFEGSTRYVMKLWWVIEQGGAWSLLLLIPVLGLLWVFCDSPAREDMRAAAREAKRIEKE 199
            +  ASS ++  WVE+E +GLVS  +P+NF R+GS+G+LMVLG+ DP  EAT +F++ F  VAS +G+RH ++L+FGT++ V + GF E+  +++    P+V+V+D+  D  Y + N+R+E GEMEAFL+DVL+G IP +     S RY MK+WW++++GGAWS LLLIPV+ L+WVFCD+P RE+ RAA RE ++ E++
Sbjct:  252 VAAASSWSVLSWVERERFGLVSDLSPDNFMRLGSLGRLMVLGVFDPKHEATRSFRKVFGDVASDMGVRHSERLMFGTVNRVTMPGFMETFNVYEGH--PQVIVMDIASDEFYTLENMRMEVGEMEAFLIDVLAGFIPARVPSTNSARYAMKIWWLVQKGGAWSFLLLIPVVALVWVFCDTPQREEARAALREVRKTERD 448
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9759.17741.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNL3_ECTSI2.420e-6649.75Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 183..206
NoneNo IPR availablePFAMPF13848Thioredoxin_6coord: 7..130
e-value: 3.0E-12
score: 46.8
NoneNo IPR availableGENE3D3.40.30.10coord: 17..138
e-value: 1.6E-10
score: 43.4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..158
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 159..178
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 179..206
NoneNo IPR availableTMHMMTMhelixcoord: 159..178
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 16..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9759contigS-dermatodea_contig9759:4865..7045 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9759.17741.1mRNA_S-dermatodea_contig9759.17741.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9759 4782..8431 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9759.17741.1 ID=prot_S-dermatodea_contig9759.17741.1|Name=mRNA_S-dermatodea_contig9759.17741.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=207bp
MTTASSRALSGWVEKENYGLVSKFTPENFSRMGSMGKLMVLGIIDPAGEA
TPAFKQEFDKVASGLGLRHQDKLVFGTMDGVQLRGFAESLRIFDFRDLPR
VVVLDMPEDTLYAVGNLRLEAGEMEAFLMDVLSGGIPGQSSFEGSTRYVM
KLWWVIEQGGAWSLLLLIPVLGLLWVFCDSPAREDMRAAAREAKRIEKEA
QRLKSD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf