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Homology
BLAST of mRNA_S-dermatodea_contig9759.17741.1 vs. uniprot
Match: D8LNL3_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL3_ECTSI) HSP 1 Score: 226 bits (576), Expect = 5.220e-63 Identity = 113/239 (47.28%), Postives = 165/239 (69.04%), Query Frame = 3
Query: 9 PALLKVVAAPAGQGAAL-QPTSFDGDMTT--------------ASSRALSGWVEKENYGLVSKFTPENFSRMGSMGKLMVLGIIDPAGEATPAFKQEFDKVASGLGLRHQDKLVFGTMDGVQLRGFAESLRIFDFRDLPRVVVLDMPEDTLYAVGNLRLEAGEMEAFLMDVLSGGIPGQSSFEGSTRYVMKLWWVIEQGGAWSLLLLIPVLGLLWVFCDSPAREDMRAAAREAKRIEKE 680
PAL+KVVA GQG L QP ++ + T ASS ++ WVE+E +GLVS +P+NF R+GS+G+LMVLG+ DP EAT +F++ F VAS +G+RH ++L+FGT++ V + GF E+ +++ P+V+V+D+ D Y + N+R+E GEMEAFL+DVL+G IP + S RY MK+WW++++GGAWS LLLIPV+ L+WVFCD+P RE+ RAA RE ++ E++
Sbjct: 215 PALVKVVA---GQGGRLLQPAAYKTERGTQGVNDDSATVSVAAASSWSVLSWVERERFGLVSDLSPDNFMRLGSLGRLMVLGVFDPKHEATRSFRKVFGDVASDMGVRHSERLMFGTVNRVTMPGFMETFNVYEGH--PQVIVMDIASDEFYTLENMRMEVGEMEAFLIDVLAGFIPARVPSTNSARYAMKIWWLVQKGGAWSFLLLIPVVALVWVFCDTPQREEARAALREVRKTERD 448
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 222.6 |
| Seed ortholog evalue | 1.7e-55 |
| Seed eggNOG ortholog | 2880.D8LNL3 |
| Preferred name | TMX3 |
| KEGG ko | ko:K09585,ko:K13996 |
| KEGG Pathway | ko04141,map04141 |
| GOs | GO:0002576,GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006457,GO:0006464,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0008150,GO:0008152,GO:0009986,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016192,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0018158,GO:0018171,GO:0018193,GO:0018198,GO:0019538,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031091,GO:0031092,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0033554,GO:0034976,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055114,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:0140096,GO:1901564 |
| EggNOG free text desc. | peptidyl-cysteine oxidation |
| EggNOG OGs | COG0526@1,KOG4277@2759 |
| EC | 5.3.4.1 |
| COG Functional cat. | CO |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03110,ko04131 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Thioredoxin-like fold |
| Ec32 ortholog | Ec-08_006690.1 |
| Exons | 5 |
| Model size | 2090 |
| Cds size | 621 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9759.17741.1 >prot_S-dermatodea_contig9759.17741.1 ID=prot_S-dermatodea_contig9759.17741.1|Name=mRNA_S-dermatodea_contig9759.17741.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=207bp
MTTASSRALSGWVEKENYGLVSKFTPENFSRMGSMGKLMVLGIIDPAGEA
TPAFKQEFDKVASGLGLRHQDKLVFGTMDGVQLRGFAESLRIFDFRDLPR
VVVLDMPEDTLYAVGNLRLEAGEMEAFLMDVLSGGIPGQSSFEGSTRYVM
KLWWVIEQGGAWSLLLLIPVLGLLWVFCDSPAREDMRAAAREAKRIEKEA
QRLKSD* back to topmRNA from alignment at S-dermatodea_contig9759:4782..8431+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig9759.17741.1 ID=mRNA_S-dermatodea_contig9759.17741.1|Name=mRNA_S-dermatodea_contig9759.17741.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3650bp|location=Sequence derived from alignment at S-dermatodea_contig9759:4782..8431+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCGCTGCCAGCGTTGCTCAAGGTGGTGGCGGCGCCCGCAGGCCAAGGG
GCGGCACTCCAGCCGACATCGTTTGACGGGGACATGACCACAGCCTCTTC
GCGGGCGTTGTCGGGATGGGTCGAGAAGGAGAACTACGGCCTGGTGTCGA
AGTTCACGCCGGAAAACTTCTCCAGGTGTCGTTTCGACGTTCTTCTTTGG
GCTCTGTGTTGAGTGTTCAGTGCTGTACCGTGTAGAGTTTGTTTTGTTTG
CAAAATTTGCGATTGTCTTGAGACACCCGGTCGCAAACCATTATTAGTAC
TACACGTCGCTAACGTGTGTGCATGGGACTATTTTTGGCTTCCCCCTGGT
GCTGTCGTCTTCCCCGTCTCTCGCAGAAAGTAGCGCAAAGTGGCACCTCC
GCTCGAAGCGCAAGCGTCAACGTTTCCAGCATTTGTAGCGCGTACCTTGG
ACCGGTGTGTTTTTGGTAGCTCACCTTTGTCGTGATTTGCGACGCTTCCG
CTTGCTGCCTGCTCAAGGCACATTTCCTCGTGTGCTTGCCGTCGCATTGC
CCTGCACGCTTCGTCGCAGAATGGGCTCCATGGGCAAGCTGATGGTGCTG
GGGATTATCGATCCTGCAGGCGAGGCAACGCCGGCTTTTAAGCAAGTGAG
AACATGGGCGTTACTTTGTCATCCGTGCTTTGCGACCTCTCCTTTGAGGG
GTTAGAGGTATCGATCGGCCTCCGCCGTTTGCGAAGCCAGCCGTCAGCAA
GACGATGCTGCGCAATTGTTTCGAACTGCCGACTGCATAGGTCGCACGGA
ATTGTTAGGCAAGATTTCGGGCTCTGCATTCCCAAAAGCGCCACCGCCGG
CGGTGTATGATTATCATTTGCCCCCAATGAGGACCCATCTATCCGATAGA
CTTCCTCAGGGGTAAACGATCTTTTCGGGAAAGCTTAAGCTTATCCCGTT
TTCGTCTACCGCGCGCGCTGCGAGCAGGAATTCGACAAGGTTGCCTCGGG
TTTGGGGCTGAGGCACCAAGACAAGCTTGTGTTCGGAACTATGGACGGCG
TCCAACTTCGAGGATTCGCGGAGTCTCTGCGCATTTTCGATTTCCGAGAT
CTCCCTCGCGTCGTGGTACTGGCGAGTTATTTTCTTCTGGATACCAAACG
CAAAAGCGCGACTGCCACTATTATTGTAGGCTATTTGAAGGACGCGCTCG
GCGCTATTTCAGGGCAACCGATTGTTTGGTTGTGTGGATGCGGGATATTT
GCCGGCTTTAGTGTTGCTTCGTGCCATAGGGAACGCGCGGCCTGTACCCG
TTCCGCACGGACACGAGGGGAGCCGCAGTTCCTTCCTTCCTCGCGCTTTT
GCTTGTTTTTTGGTAAGCCGCTGGGCGAAAGTTCCGGCGTTGCTTCAGGA
AGTCACGCCCATTGTCGGGACGCAATCTCGCACCTTGAGCGCCCGTGGCG
CTGGCCGTATGGCTGAATCCTTAACCTTCCAACCACTCGGCTTGTTTCCG
CCAGGACATGCCGGAAGACACGCTCTACGCGGTGGGAAATCTACGCCTGG
AAGCCGGGGAGATGGAGGCTTTCCTCATGGACGTATTGTCAGGTACGACA
CACGCTAACGTTGCGCGCCCATACAGTACTACAGCCCCGAGCACCCCGGC
TCCCCCTTTTCTCACCGTGCAGGAGATGTCACGTAGGGCGTTGTTCGGGT
CAATTTACCTGCCGCACGATGCTATTAATAGACGGGAGGGCGACGTGTAC
AGTGCGATGGGCTCTTCGACCATGCGACCATGCGGGGTCGTTGGAGAGCG
ACTGCGGGCAAGCACTGCTCTGCCGTCATTGGAGCGCGGTGCCGCTCACT
TCTTCCCACCTTTGAGACAGTCCCACGCGCGGGCGAACAGGTTACACCCT
TGTCGGTCGCGGGTCTCGCGTGGTTTCAAGCGCGACTACAGTACCGCACC
GCACGCCCCCCCTCCGCGTGTCGAGGTCCAGCTTTCAACTGAAGGTGAAG
CCTGCTCCGCTTCTACCCGCCGCCTCGTTCCCCTTCTCTGCAGGGGGCAT
TCCCGGACAGAGCTCTTTCGAAGGCTCCACCCGGTACGTGATGAAGCTTT
GGTGGGTGATAGAGCAGGGAGGCGCATGGAGCCTGCTGCTTCTTATCCCC
GTGCTGGGTTTGTTGTGGGTTTTCTGCGACTCCCCCGCGAGAGAAGATAT
GCGGGCGGCGGCTAGAGAGGCCAAGCGAATAGAGAAGGAAGCCCAGCGCC
TCAAGAGCGACTAGGGCTGCAGCTCAGTACCAGTAGCTATTCTCCCGCTG
TAAAAAGAAACCGGTAGAGGCTATACAGTACAGGCCCGCTCATAAGAAAC
TGAAAATCAGGCTCAGCCTGAGTTTCTTATTGTACTTGAGCAAGGAACCT
CATTTTCTCAAACGGGTCTTTCTTATTGTTTCCGTCCAAAGAACAGCTGT
CTGTCTTCCATATCTACTGTTAGGGCCAGGAATGACCATCCATGGTGCTT
GCTCCCAGTAAGGATTTATGTGTTTTTTGTTTGTTTGCCTTTTGAGGTAT
GAGTCAATGTGAGCCAATCAGAGGGTGTAATGGAGGACAAAAGGATGATT
TCCCTCAAAACCGCAGGAAGAAAATCAGCCATTTTCACATCGCGTTTGAC
GTGTATACAACATGAGCGTGAGGACGCAAATTGGTTGAAAGAGTTCGCTT
TCGACTCGTGAGAGAGGCGCACTGCACCAGCGGGCGCGGAGCGAAGACAG
GCATGCTCGGCACTGCCTCCAGCTTTGGCGTGGCGGCGGTGCTGTGGCCA
TGGTGCCCTCCAAACGCCCGCTCATTGGCGTTCAGAAACGTATCCCAATC
CGACAAGCATACGAAGCTGATTATATTTTTTCCTGGCTGAGGCTTCTTGG
CTCTTTACAGCTAATTTCACATGTACTGCCGTACAAGTAAATTAATTGGT
TTGTCTTCATATATTAATTAATAGCCTGTGTTTTGTATTTTTAGTATGAT
AATTAAGAAGATTCCTGTGTTTTACATGTTTCCTGGCTATTGACGTATTG
TATTGAATATAGTATAGCATTTCTCCCTGTTTTACCCGTTTTGACGCCCA
AGTCCTCCTTTTTGATACACTCGATTTAACCGCCACCTCAATGGATAGGA
CGCGGCTTGGTGCGTTGTGACGAGAGAAACCAGGCCAAGCGTTTGTACCA
TTTTCTTTCGTCGCCGCTGAGAAGTTCTGGGACCGGGGGTGGATTCAGAG
CAAATATGTGCTGTTTTATGAGGTTTTTTGGCCGTATCTTGACGAAAAGG
TATCGAATCAAAAGGTAGTCTGTACAACTCTTCGTCTCGGCTGTAGGACC
GTCTGTGCTTTTCGCCAGGGCCCGAACGGCTTCTGTAACCCGGTTGAATG
TAAAGAAGATTCTGCACAATACCCAAGTAAAATGTTTTTGCACGCTGGCT
ATGTTCAATACAGTTTGTTCCCGGTCTAAACGGCCCGTTTTTGGAGGAAC
CAGCGCACAGAAACCTGGGCACCATGGATTATCATTCCTTGCCCTAACTG
TACGCATTGTACTACTCGTGCACAACGTTAGTAGTACTCTGCTGCACTCC
GAAAAAACAAGTACTGGTCTTGTTGCAGGTACACGTTACGCTTGCGTTTT
back to topCoding sequence (CDS) from alignment at S-dermatodea_contig9759:4782..8431+ >mRNA_S-dermatodea_contig9759.17741.1 ID=mRNA_S-dermatodea_contig9759.17741.1|Name=mRNA_S-dermatodea_contig9759.17741.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at S-dermatodea_contig9759:4782..8431+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCACAGCCTCTTCGCGGGCGTTGTCGGGATGGGTCGAGAAGGAGAA
CTACGGCCTGGTGTCGAAGTTCACGCCGGAAAACTTCTCCAGATGACCAC
AGCCTCTTCGCGGGCGTTGTCGGGATGGGTCGAGAAGGAGAACTACGGCC
TGGTGTCGAAGTTCACGCCGGAAAACTTCTCCAGAATGGGCTCCATGGGC
AAGCTGATGGTGCTGGGGATTATCGATCCTGCAGGCGAGGCAACGCCGGC
TTTTAAGCAAAATGGGCTCCATGGGCAAGCTGATGGTGCTGGGGATTATC
GATCCTGCAGGCGAGGCAACGCCGGCTTTTAAGCAAGAATTCGACAAGGT
TGCCTCGGGTTTGGGGCTGAGGCACCAAGACAAGCTTGTGTTCGGAACTA
TGGACGGCGTCCAACTTCGAGGATTCGCGGAGTCTCTGCGCATTTTCGAT
TTCCGAGATCTCCCTCGCGTCGTGGTACTGGAATTCGACAAGGTTGCCTC
GGGTTTGGGGCTGAGGCACCAAGACAAGCTTGTGTTCGGAACTATGGACG
GCGTCCAACTTCGAGGATTCGCGGAGTCTCTGCGCATTTTCGATTTCCGA
GATCTCCCTCGCGTCGTGGTACTGGACATGCCGGAAGACACGCTCTACGC
GGTGGGAAATCTACGCCTGGAAGCCGGGGAGATGGAGGCTTTCCTCATGG
ACGTATTGTCAGGACATGCCGGAAGACACGCTCTACGCGGTGGGAAATCT
ACGCCTGGAAGCCGGGGAGATGGAGGCTTTCCTCATGGACGTATTGTCAG
GGGGCATTCCCGGACAGAGCTCTTTCGAAGGCTCCACCCGGTACGTGATG
AAGCTTTGGTGGGTGATAGAGCAGGGAGGCGCATGGAGCCTGCTGCTTCT
TATCCCCGTGCTGGGTTTGTTGTGGGTTTTCTGCGACTCCCCCGCGAGAG
AAGATATGCGGGCGGCGGCTAGAGAGGCCAAGCGAATAGAGAAGGAAGCC
CAGCGCCTCAAGAGCGACTAGGGGGCATTCCCGGACAGAGCTCTTTCGAA
GGCTCCACCCGGTACGTGATGAAGCTTTGGTGGGTGATAGAGCAGGGAGG
CGCATGGAGCCTGCTGCTTCTTATCCCCGTGCTGGGTTTGTTGTGGGTTT
TCTGCGACTCCCCCGCGAGAGAAGATATGCGGGCGGCGGCTAGAGAGGCC
AAGCGAATAGAGAAGGAAGCCCAGCGCCTCAAGAGCGACTAG back to top
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