prot_S-dermatodea_contig966.17668.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig966.17668.1
Unique Nameprot_S-dermatodea_contig966.17668.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length178
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig966.17668.1 vs. uniprot
Match: D7FTJ5_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ5_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.240e-21
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 0 
Query:   64 SDGEPRVGRGGKRRARPLGSRLRAIARLGDDAAAGDSEDDDSADEYKPDAEDDVLPGDDKVTLDADDI-RETKKARSAAAAQRGKDSPSAPAKSTGGSSNGGGAGRPGSAWSGFG 177
            S  + R+GRGGKR+ARPLGSRLRAIARLGDDAAAGDS+DD+SADEYKPDA+DDVLP D K+   AD++ RETKK         GK SP            G G  RP +AWSGFG
Sbjct:  781 SGDDTRIGRGGKRKARPLGSRLRAIARLGDDAAAGDSDDDNSADEYKPDADDDVLPEDHKIY--ADELPRETKK---------GKSSP------------GVGGARPRNAWSGFG 872
[Close]
BLAST of mRNA_S-dermatodea_contig966.17668.1 vs. uniprot
Match: A0A6H5JPR7_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPR7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.890e-18
Identity = 68/117 (58.12%), Postives = 77/117 (65.81%), Query Frame = 0 
Query:   63 DSDGEPRVGRGGKRRARPLGSRLRAIARLGDDAAAGDSEDDDSADEYKPDAED-DVLPGDDKVTLDADDI-RETKKARSAAAAQRGKDSPSAPAKSTGGSSNGGGAGRPGSAWSGFG 177
            DS  + RVGRGGKR+ARPLGSRLRAIARLGDDAAAGDSEDD+SADEYKP     DVLP D K+   AD++ RETKK +S                     S+G G  RP +AWSGFG
Sbjct:  750 DSGEDTRVGRGGKRKARPLGSRLRAIARLGDDAAAGDSEDDNSADEYKPXXXXXDVLPEDHKIY--ADELPRETKKGKS---------------------SSGVGGARPRNAWSGFG 843
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig966.17668.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTJ5_ECTSI3.240e-2160.87JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JPR7_9PHAE3.890e-1858.12JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig966contigS-dermatodea_contig966:21652..22796 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig966.17668.1mRNA_S-dermatodea_contig966.17668.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig966 21650..22796 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig966.17668.1 ID=prot_S-dermatodea_contig966.17668.1|Name=mRNA_S-dermatodea_contig966.17668.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=178bp
PAGAAGVDQGGGSAGKKRGRGQSQAGGLGAEDDGSDIGNSGDDDGDDDID
VGVDDGDEEEEEDSDGEPRVGRGGKRRARPLGSRLRAIARLGDDAAAGDS
EDDDSADEYKPDAEDDVLPGDDKVTLDADDIRETKKARSAAAAQRGKDSP
SAPAKSTGGSSNGGGAGRPGSAWSGFGA
back to top