mRNA_S-dermatodea_contig966.17668.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig966.17668.1
Unique NamemRNA_S-dermatodea_contig966.17668.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig966.17668.1 vs. uniprot
Match: D7FTJ5_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ5_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.240e-21
Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:  190 SDGEPRVGRGGKRRARPLGSRLRAIARLGDDAAAGDSEDDDSADEYKPDAEDDVLPGDDKVTLDADDI-RETKKARSAAAAQRGKDSPSAPAKSTGGSSNGGGAGRPGSAWSGFG 531
            S  + R+GRGGKR+ARPLGSRLRAIARLGDDAAAGDS+DD+SADEYKPDA+DDVLP D K+   AD++ RETKK         GK SP            G G  RP +AWSGFG
Sbjct:  781 SGDDTRIGRGGKRKARPLGSRLRAIARLGDDAAAGDSDDDNSADEYKPDADDDVLPEDHKIY--ADELPRETKK---------GKSSP------------GVGGARPRNAWSGFG 872
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BLAST of mRNA_S-dermatodea_contig966.17668.1 vs. uniprot
Match: A0A6H5JPR7_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPR7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.890e-18
Identity = 68/117 (58.12%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:  187 DSDGEPRVGRGGKRRARPLGSRLRAIARLGDDAAAGDSEDDDSADEYKPDAED-DVLPGDDKVTLDADDI-RETKKARSAAAAQRGKDSPSAPAKSTGGSSNGGGAGRPGSAWSGFG 531
            DS  + RVGRGGKR+ARPLGSRLRAIARLGDDAAAGDSEDD+SADEYKP     DVLP D K+   AD++ RETKK +S                     S+G G  RP +AWSGFG
Sbjct:  750 DSGEDTRVGRGGKRKARPLGSRLRAIARLGDDAAAGDSEDDNSADEYKPXXXXXDVLPEDHKIY--ADELPRETKKGKS---------------------SSGVGGARPRNAWSGFG 843
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig966.17668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTJ5_ECTSI3.240e-2160.87JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JPR7_9PHAE3.890e-1858.12JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig966contigS-dermatodea_contig966:21650..22796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog2880.D7FTJ5
Preferred nameJHD1
KEGG rclassRC00185,RC03038
KEGG koko:K10276,ko:K11445
KEGG ReactionR10056
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006482,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008214,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016491,GO:0016569,GO:0016570,GO:0016577,GO:0016705,GO:0016706,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032451,GO:0032452,GO:0032784,GO:0032786,GO:0032968,GO:0034243,GO:0035064,GO:0036211,GO:0042393,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051213,GO:0051252,GO:0051254,GO:0051276,GO:0051864,GO:0055114,GO:0060255,GO:0065007,GO:0070076,GO:0070544,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0140030,GO:0140034,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.demethylase
EggNOG OGsKOG1633@1,KOG1633@2759
EC1.14.11.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size536
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925423.548552-CDS-S-dermatodea_contig966:21651..218431622925423.548552-CDS-S-dermatodea_contig966:21651..21843Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig966 21652..21843 -
1694079923.4743583-CDS-S-dermatodea_contig966:21651..218431694079923.4743583-CDS-S-dermatodea_contig966:21651..21843Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig966 21652..21843 -
1622925423.5593128-CDS-S-dermatodea_contig966:22454..227961622925423.5593128-CDS-S-dermatodea_contig966:22454..22796Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig966 22455..22796 -
1694079923.486116-CDS-S-dermatodea_contig966:22454..227961694079923.486116-CDS-S-dermatodea_contig966:22454..22796Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig966 22455..22796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig966.17668.1prot_S-dermatodea_contig966.17668.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig966 21652..22796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig966.17668.1

>prot_S-dermatodea_contig966.17668.1 ID=prot_S-dermatodea_contig966.17668.1|Name=mRNA_S-dermatodea_contig966.17668.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=178bp
PAGAAGVDQGGGSAGKKRGRGQSQAGGLGAEDDGSDIGNSGDDDGDDDID
VGVDDGDEEEEEDSDGEPRVGRGGKRRARPLGSRLRAIARLGDDAAAGDS
EDDDSADEYKPDAEDDVLPGDDKVTLDADDIRETKKARSAAAAQRGKDSP
SAPAKSTGGSSNGGGAGRPGSAWSGFGA
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mRNA from alignment at S-dermatodea_contig966:21650..22796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig966.17668.1 ID=mRNA_S-dermatodea_contig966.17668.1|Name=mRNA_S-dermatodea_contig966.17668.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1147bp|location=Sequence derived from alignment at S-dermatodea_contig966:21650..22796- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGCGGGTGCGGCCGGGGTGGACCAAGGCGGCGGGAGCGCAGGGAAGAA
GAGAGGGAGGGGGCAGTCGCAGGCTGGTGGGTTGGGCGCAGAGGACGACG
GCTCTGATATCGGAAACAGCGGCGATGACGATGGTGACGATGACATTGAT
GTTGGTGTTGACGATGGGGATGAGGAGGAAGAAGAAGATAGCGATGGCGA
GCCTCGCGTCGGGAGGGGCGGCAAGCGAAGAGCCAGGCCTCTCGGGAGCA
GGTTGCGGGCGATCGCCAGGCTCGGGGATGACGCGGCGGCGGGCGACTCC
GAAGACGATGATTCGGCCGACGAGTACAAGCCGGACGCGGAGGTATGTCC
TCGCCTCAATACCTTGCAGCTCTCGCGGCGGTTGTCGTTGTTTGACGTAC
CTAGTAGTTGCGAAGGTATCGGTTGCTGCGGGCGTCCCCGCCCTCGGTAT
TGGTGTTGCGTGGTTGATTTTTTCTCACGTGTTTCATAAAGGCGCTACGA
AGTAGCTATTTGGGCTATCGGCAGCGCATGTTGTTTGTACCCACAGGGGG
ATGCCAGCATCCATAGCTATGTCGTACAGCTCGTGGTGGACCGGTCAATG
CACAGCCTCAGTACGTAGCCTCGATGCTTGACACGATACGCTCTGACCTA
CCTAGTGTATCCGGAAGGCGCACCGTAGGCACCCTAAGCCACCCCTTGCC
ATAATCGTGGCGAACCGGGACCCGCCATCACGGTGCGACATGCACACGGT
CAGACATCAAGCACGGTTCTTCGCAGAAAGCTTTGAAGTGTCCCGTGGCC
GCCCCCGTCCTTCTACACAAACCGCTCTTGTCTCCGCGTCGTCAGCGATA
ATTCGGCCGCTCGGAAGCATTTTCGAACATGCTTCCCGGGACTTACAATA
TTCTTGCCAAACCCCTGTCCCCGCCACCCCCATCCCTTACCCCCGATTCG
CAGGACGACGTCCTACCGGGCGATGACAAAGTTACGCTAGACGCCGATGA
CATCCGAGAAACGAAGAAGGCCCGTTCGGCAGCGGCAGCGCAGCGCGGGA
AGGACTCCCCCTCGGCCCCAGCCAAGAGTACCGGCGGCAGTAGCAATGGT
GGCGGCGCCGGGCGTCCTGGGAGCGCGTGGAGTGGGTTTGGCGCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig966:21650..22796-

>mRNA_S-dermatodea_contig966.17668.1 ID=mRNA_S-dermatodea_contig966.17668.1|Name=mRNA_S-dermatodea_contig966.17668.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at S-dermatodea_contig966:21650..22796- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGCGGGTGCGGCCGGGGTGGACCAAGGCGGCGGGAGCGCAGGGAAGAA
GAGAGGGAGGGGGCAGTCGCAGGCTGGTGGGTTGGGCGCAGAGGACGACG
GCTCTGATATCGGAAACAGCGGCGATGACGATGGTGACGATGACATTGAT
GTTGGTGTTGACGATGGGGATGAGGAGGAAGAAGAAGATAGCGATGGCGA
GCCTCGCGTCGGGAGGGGCGGCAAGCGAAGAGCCAGGCCTCTCGGGAGCA
GGTTGCGGGCGATCGCCAGGCTCGGGGATGACGCGGCGGCGGGCGACTCC
GAAGACGATGATTCGGCCGACGAGTACAAGCCGGACGCGGAGCCTGCGGG
TGCGGCCGGGGTGGACCAAGGCGGCGGGAGCGCAGGGAAGAAGAGAGGGA
GGGGGCAGTCGCAGGCTGGTGGGTTGGGCGCAGAGGACGACGGCTCTGAT
ATCGGAAACAGCGGCGATGACGATGGTGACGATGACATTGATGTTGGTGT
TGACGATGGGGATGAGGAGGAAGAAGAAGATAGCGATGGCGAGCCTCGCG
TCGGGAGGGGCGGCAAGCGAAGAGCCAGGCCTCTCGGGAGCAGGTTGCGG
GCGATCGCCAGGCTCGGGGATGACGCGGCGGCGGGCGACTCCGAAGACGA
TGATTCGGCCGACGAGTACAAGCCGGACGCGGAGGACGACGTCCTACCGG
GCGATGACAAAGTTACGCTAGACGCCGATGACATCCGAGAAACGAAGAAG
GCCCGTTCGGCAGCGGCAGCGCAGCGCGGGAAGGACTCCCCCTCGGCCCC
AGCCAAGAGTACCGGCGGCAGTAGCAATGGTGGCGGCGCCGGGCGTCCTG
GGAGCGCGTGGAGTGGGTTTGGCGCCGACGACGTCCTACCGGGCGATGAC
AAAGTTACGCTAGACGCCGATGACATCCGAGAAACGAAGAAGGCCCGTTC
GGCAGCGGCAGCGCAGCGCGGGAAGGACTCCCCCTCGGCCCCAGCCAAGA
GTACCGGCGGCAGTAGCAATGGTGGCGGCGCCGGGCGTCCTGGGAGCGCG
TGGAGTGGGTTTGGCGCC
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