prot_S-dermatodea_contig9413.17448.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig9413.17448.1
Unique Name	prot_S-dermatodea_contig9413.17448.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	179

Homology

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BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: D7G7Q4_ECTSI (Dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q4_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 3.680e-90
Identity = 135/172 (78.49%), Postives = 152/172 (88.37%), Query Frame = 0

Query:    7 SDASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 178
            S+A PR FFE +G P+YIAAPMVE SEAAFRYLVRRHGC L YTQMLH+ +FAPD A KFR +RFDGVD+EEDRPLI QFCGN+PDTVVRAARH+E   DAVDLNLGCPQ+IA+KGNYGA+LL +P LCE IVAAMSRELSVPVTVKIRA ++E+DTLDL RRLEGAGAQL+
Sbjct:   80 SEAEPRSFFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDRESDTLDLARRLEGAGAQLL 251

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BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 9.090e-85
Identity = 136/172 (79.07%), Postives = 153/172 (88.95%), Query Frame = 0

Query:    7 SDASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 178
            S+A PRGFFE +G P+YIAAPMVE SEAAFRYLVRRHGC L YTQMLH+ +FAPD A KFR +RFDGVD+EEDRPLI QFCGN+PDTVVRAARH+E   DAVDLNLGCPQ+IA+KGNYGA+LL +P LCE IVAAMSRELSVPVTVKIRA +K++DTLDL RRLEGAGAQL+
Sbjct:   80 SEADPRGFFERIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKDSDTLDLARRLEGAGAQLL 251

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BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A836CKE0_9STRA (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE0_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.720e-64
Identity = 103/165 (62.42%), Postives = 128/165 (77.58%), Query Frame = 0

Query:   14 FFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 178
            F++++GSP Y+AAPMVE SE AFR L RRHGCDL YTQMLH+ +F+  KA KFR     G D +EDRPLIAQFCGNDP+ +V+AAR++E  V+A DLNLGCPQ+IA+KGNYGA+LL    LCER++ AM+ +L+ PVTVKIR L    +T+ L  RLEGAG QLI
Sbjct:    1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLI 165

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BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A7S2DRC2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DRC2_9EUKA)

HSP 1 Score: 179 bits (454), Expect = 2.770e-53
Identity = 95/169 (56.21%), Postives = 117/169 (69.23%), Query Frame = 0

Query:   10 SPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 178
            +P   ++ +G P+ + APMV  SE AFR L RRHG  L YT MLHS RFA ++A  +R + FD  D   DRPL+AQFCG+DP T++ AARHI+G  DAVDLN GCPQ IA++G+YGAFLL +P L ERIV  +   LSVPV VKIR L     TL L RR+E AGA L+
Sbjct:   60 TPWETWQRLGEPKLVLAPMVNQSELAFRLLARRHGAGLCYTPMLHSTRFAAEEA--YRVENFD--DHPTDRPLVAQFCGDDPATLLAAARHIQGRCDAVDLNCGCPQAIAKRGHYGAFLLDEPELIERIVRKLVSGLSVPVFVKIRVLPSWEATLGLARRIEAAGASLL 224

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BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A7S2C8F7_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8F7_9STRA)

HSP 1 Score: 183 bits (465), Expect = 5.720e-53
Identity = 98/179 (54.75%), Postives = 124/179 (69.27%), Query Frame = 0

Query:    7 SDASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGV--DEE-----EDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 178
            +D SP  F E +G P+++AAPMV  S+ AFR LVRRHG DL +TQMLH+  FA     ++RE  FDG   D++     EDRPLIAQFCGNDP TVV AA +I+  VDA+DLNLGCPQ+IA+KG YGAFLLS+P L   IV  M+  L VP+TVKIR L  + +T+     L+ AGA ++
Sbjct:   53 TDGSP--FLERLGHPKFVAAPMVGQSDLAFRLLVRRHGADLAFTQMLHAKNFAT--VPRYREDNFDGFLRDDQSTYAMEDRPLIAQFCGNDPGTVVEAASYIQDHVDAIDLNLGCPQKIAKKGRYGAFLLSEPVLVRSIVERMATSLDVPITVKIRMLPTKEETVQFACMLQDAGAAMV 227

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BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A812WPS8_9DINO (Dus1l protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812WPS8_9DINO)

HSP 1 Score: 171 bits (434), Expect = 1.070e-50
Identity = 95/168 (56.55%), Postives = 119/168 (70.83%), Query Frame = 0

Query:   14 FFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIE-GVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEA--DTLDLVRRLEGAGAQLI 178
            F++S+GSP+Y+ APMV+ SE AFR L RR+G +L YT MLHS  F+     K+R+++F    E  DRPL AQFCG+DP TV+ AA+ +    VDAVDLN GCPQ IARKG+YGAFLLS+P + E IV  + RELSVP TVKIR +      DTL LV RLE AGA ++
Sbjct:   23 FWKSIGSPKYVCAPMVDQSELAFRMLCRRYGTELCYTPMLHSRMFSTQP--KYRKEQFSTCPE--DRPLFAQFCGDDPATVLAAAKLLPPNSVDAVDLNCGCPQGIARKGHYGAFLLSEPEVIEGIVRTLDRELSVPSTVKIRLVNANELQDTLKLVSRLEAAGASVL 186

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BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A7S1XML0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XML0_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.750e-49
Identity = 94/171 (54.97%), Postives = 115/171 (67.25%), Query Frame = 0

Query:    8 DASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 178
            D +P  F+E +GSP+ + APMV  SE  FR L RR+G DL YT M HS  F+ D A  +R   F    E  DRPL  QFCGN+P T+V A RH++   DAVDLNLGCPQ IA++G+YG+FLL +  L   IV+AM REL VPVTVKIR L +  DTL L R L GAGA+L+
Sbjct:   26 DMTPWEFYEHIGSPKLVCAPMVNASELPFRMLTRRYGADLCYTPMFHSRLFSEDAA--YRAMAFTTCPE--DRPLFVQFCGNEPATLVAAGRHVQDRCDAVDLNLGCPQGIAKRGHYGSFLLEEWDLLRDIVSAMVRELDVPVTVKIRLLPRMEDTLQLCRVLLGAGAKLL 192

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BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A8K1CA77_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA77_PYTOL)

HSP 1 Score: 171 bits (434), Expect = 5.720e-49
Identity = 90/177 (50.85%), Postives = 118/177 (66.67%), Query Frame = 0

Query:    2 TRIAGSDASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 178
            TR+ G +     FF ++GSP+ + APMV+ SE AFR L RRHG +L YT M HS  FA  ++ ++R + F+     +DRPLI QFCGNDP TV+ AARH+EG  DAVDLNLGCPQ IARKG YG+FL+ +      IV  +S+ LS+PVTVKIR      +TL+    ++ AGA L+
Sbjct:   22 TRLRGYE-----FFRAIGSPQRVVAPMVDQSELAFRMLTRRHGAELCYTPMFHSRLFA--ESAEYRAKMFEK--HIKDRPLIVQFCGNDPQTVLAAARHVEGHCDAVDLNLGCPQGIARKGRYGSFLMKEKDTVRDIVTTLSQNLSIPVTVKIRIFPDRQETLEFADMIQAAGADLL 189

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BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: I0Z406_COCSC (FMN-linked oxidoreductase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z406_COCSC)

HSP 1 Score: 171 bits (434), Expect = 8.460e-49
Identity = 93/165 (56.36%), Postives = 107/165 (64.85%), Query Frame = 0

Query:   15 FESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLIA 179
            F S GSPRY  APMV+ SE AFR L RRHG    YT MLHS  F  D    +R + F     E DRPL+ QFC NDP+T++ AAR +E   DA+DLNLGCPQRIAR+G YGAFL+ D  L ERIV   +  LSVPVTVKIR       T++  R LE AGA LIA
Sbjct:   19 FRSWGSPRYFVAPMVDQSELAFRMLCRRHGATAAYTPMLHSRLFLQDP--NYRAEHFSTC--EGDRPLMVQFCANDPETLLAAARIVEPHADAIDLNLGCPQRIARRGRYGAFLMDDLPLVERIVRTCAEGLSVPVTVKIRVFPDRQKTVEYARMLERAGASLIA 179

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BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: K3WW65_GLOUD (tRNA-dihydrouridine synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW65_GLOUD)

HSP 1 Score: 171 bits (432), Expect = 1.340e-48
Identity = 87/165 (52.73%), Postives = 112/165 (67.88%), Query Frame = 0

Query:   14 FFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 178
            FF ++G+P+ I APMV+ SE AFR L R+HG +L YT M HS  FA   A  +RE+ F+     +DRPLI QFCGNDP TV+ AA+H+EG  DAVDLNLGCPQ IARKG YG+FL+ +  +   IV  +S  LS+PVTVKIR    E +TL+    L+ AG  ++
Sbjct:   21 FFHAIGAPKRIVAPMVDQSELAFRMLTRKHGAELCYTPMFHSRLFAESPA--YREKMFE--QHIQDRPLIVQFCGNDPATVLAAAKHVEGHCDAVDLNLGCPQGIARKGRYGSFLMKEKDVVREIVQTLSDNLSIPVTVKIRMFPDEQETLEFCDMLQAAGCDML 181

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q4_ECTSI	3.680e-90	78.49	Dihydrouridine synthase n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JD10_9PHAE	9.090e-85	79.07	Reverse transcriptase domain-containing protein n=...	[more]
A0A836CKE0_9STRA	2.720e-64	62.42	tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tr...	[more]
A0A7S2DRC2_9EUKA	2.770e-53	56.21	Hypothetical protein (Fragment) n=1 Tax=Haptolina ...	[more]
A0A7S2C8F7_9STRA	5.720e-53	54.75	Hypothetical protein n=3 Tax=Dictyocha speculum Ta...	[more]
A0A812WPS8_9DINO	1.070e-50	56.55	Dus1l protein n=2 Tax=unclassified Symbiodinium Ta...	[more]
A0A7S1XML0_9STRA	1.750e-49	54.97	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
A0A8K1CA77_PYTOL	5.720e-49	50.85	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
I0Z406_COCSC	8.460e-49	56.36	FMN-linked oxidoreductase n=1 Tax=Coccomyxa subell...	[more]
K3WW65_GLOUD	1.340e-48	52.73	tRNA-dihydrouridine synthase n=1 Tax=Globisporangi...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001269	tRNA-dihydrouridine synthase	PFAM	PF01207	Dus	coord: 25..178 e-value: 6.3E-38 score: 130.6
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70		coord: 18..179 e-value: 6.1E-48 score: 165.4
None	No IPR available	PANTHER	PTHR11082	TRNA-DIHYDROURIDINE SYNTHASE	coord: 10..179
None	No IPR available	PANTHER	PTHR11082:SF5	TRNA-DIHYDROURIDINE(16/17) SYNTHASE [NAD(P)(+)]-LIKE	coord: 10..179
None	No IPR available	SUPERFAMILY	51395	FMN-linked oxidoreductases	coord: 21..178
IPR018517	tRNA-dihydrouridine synthase, conserved site	PROSITE	PS01136	UPF0034	coord: 108..126

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig9413	contig	S-dermatodea_contig9413:454..2469 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig9413.17448.1	mRNA_S-dermatodea_contig9413.17448.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig9413 454..2469 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig9413.17448.1 ID=prot_S-dermatodea_contig9413.17448.1|Name=mRNA_S-dermatodea_contig9413.17448.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=179bp
ATRIAGSDASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYT
QMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARH
IEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPV
TVKIRALEKEADTLDLVRRLEGAGAQLIA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001269	tRNA_hU_synthase
IPR013785	Aldolase_TIM
IPR018517	tRNA_hU_synthase_CS