mRNA_S-dermatodea_contig9413.17448.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: D7G7Q4_ECTSI (Dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q4_ECTSI) HSP 1 Score: 279 bits (714), Expect = 3.680e-90 Identity = 135/172 (78.49%), Postives = 152/172 (88.37%), Query Frame = 1
Query: 19 SDASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 534
S+A PR FFE +G P+YIAAPMVE SEAAFRYLVRRHGC L YTQMLH+ +FAPD A KFR +RFDGVD+EEDRPLI QFCGN+PDTVVRAARH+E DAVDLNLGCPQ+IA+KGNYGA+LL +P LCE IVAAMSRELSVPVTVKIRA ++E+DTLDL RRLEGAGAQL+
Sbjct: 80 SEAEPRSFFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDRESDTLDLARRLEGAGAQLL 251
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE) HSP 1 Score: 281 bits (719), Expect = 9.090e-85 Identity = 136/172 (79.07%), Postives = 153/172 (88.95%), Query Frame = 1
Query: 19 SDASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 534
S+A PRGFFE +G P+YIAAPMVE SEAAFRYLVRRHGC L YTQMLH+ +FAPD A KFR +RFDGVD+EEDRPLI QFCGN+PDTVVRAARH+E DAVDLNLGCPQ+IA+KGNYGA+LL +P LCE IVAAMSRELSVPVTVKIRA +K++DTLDL RRLEGAGAQL+
Sbjct: 80 SEADPRGFFERIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMSRELSVPVTVKIRAQDKDSDTLDLARRLEGAGAQLL 251
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A836CKE0_9STRA (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE0_9STRA) HSP 1 Score: 208 bits (530), Expect = 2.720e-64 Identity = 103/165 (62.42%), Postives = 128/165 (77.58%), Query Frame = 1
Query: 40 FFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 534
F++++GSP Y+AAPMVE SE AFR L RRHGCDL YTQMLH+ +F+ KA KFR G D +EDRPLIAQFCGNDP+ +V+AAR++E V+A DLNLGCPQ+IA+KGNYGA+LL LCER++ AM+ +L+ PVTVKIR L +T+ L RLEGAG QLI
Sbjct: 1 FYKAIGSPTYVAAPMVEQSEKAFRLLCRRHGCDLAYTQMLHAQQFSMLKAAKFRCVCCGGEDPQEDRPLIAQFCGNDPELLVKAARYVEHQVEACDLNLGCPQQIAKKGNYGAYLLPQGDLCERLIDAMASQLACPVTVKIRCLSTVEETVKLALRLEGAGVQLI 165
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A7S2DRC2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DRC2_9EUKA) HSP 1 Score: 179 bits (454), Expect = 2.770e-53 Identity = 95/169 (56.21%), Postives = 117/169 (69.23%), Query Frame = 1
Query: 28 SPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 534
+P ++ +G P+ + APMV SE AFR L RRHG L YT MLHS RFA ++A +R + FD D DRPL+AQFCG+DP T++ AARHI+G DAVDLN GCPQ IA++G+YGAFLL +P L ERIV + LSVPV VKIR L TL L RR+E AGA L+
Sbjct: 60 TPWETWQRLGEPKLVLAPMVNQSELAFRLLARRHGAGLCYTPMLHSTRFAAEEA--YRVENFD--DHPTDRPLVAQFCGDDPATLLAAARHIQGRCDAVDLNCGCPQAIAKRGHYGAFLLDEPELIERIVRKLVSGLSVPVFVKIRVLPSWEATLGLARRIEAAGASLL 224
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A7S2C8F7_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8F7_9STRA) HSP 1 Score: 183 bits (465), Expect = 5.720e-53 Identity = 98/179 (54.75%), Postives = 124/179 (69.27%), Query Frame = 1
Query: 19 SDASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGV--DEE-----EDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 534
+D SP F E +G P+++AAPMV S+ AFR LVRRHG DL +TQMLH+ FA ++RE FDG D++ EDRPLIAQFCGNDP TVV AA +I+ VDA+DLNLGCPQ+IA+KG YGAFLLS+P L IV M+ L VP+TVKIR L + +T+ L+ AGA ++
Sbjct: 53 TDGSP--FLERLGHPKFVAAPMVGQSDLAFRLLVRRHGADLAFTQMLHAKNFAT--VPRYREDNFDGFLRDDQSTYAMEDRPLIAQFCGNDPGTVVEAASYIQDHVDAIDLNLGCPQKIAKKGRYGAFLLSEPVLVRSIVERMATSLDVPITVKIRMLPTKEETVQFACMLQDAGAAMV 227
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A812WPS8_9DINO (Dus1l protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812WPS8_9DINO) HSP 1 Score: 171 bits (434), Expect = 1.070e-50 Identity = 95/168 (56.55%), Postives = 119/168 (70.83%), Query Frame = 1
Query: 40 FFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIE-GVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEA--DTLDLVRRLEGAGAQLI 534
F++S+GSP+Y+ APMV+ SE AFR L RR+G +L YT MLHS F+ K+R+++F E DRPL AQFCG+DP TV+ AA+ + VDAVDLN GCPQ IARKG+YGAFLLS+P + E IV + RELSVP TVKIR + DTL LV RLE AGA ++
Sbjct: 23 FWKSIGSPKYVCAPMVDQSELAFRMLCRRYGTELCYTPMLHSRMFSTQP--KYRKEQFSTCPE--DRPLFAQFCGDDPATVLAAAKLLPPNSVDAVDLNCGCPQGIARKGHYGAFLLSEPEVIEGIVRTLDRELSVPSTVKIRLVNANELQDTLKLVSRLEAAGASVL 186
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A7S1XML0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XML0_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.750e-49 Identity = 94/171 (54.97%), Postives = 115/171 (67.25%), Query Frame = 1
Query: 22 DASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 534
D +P F+E +GSP+ + APMV SE FR L RR+G DL YT M HS F+ D A +R F E DRPL QFCGN+P T+V A RH++ DAVDLNLGCPQ IA++G+YG+FLL + L IV+AM REL VPVTVKIR L + DTL L R L GAGA+L+
Sbjct: 26 DMTPWEFYEHIGSPKLVCAPMVNASELPFRMLTRRYGADLCYTPMFHSRLFSEDAA--YRAMAFTTCPE--DRPLFVQFCGNEPATLVAAGRHVQDRCDAVDLNLGCPQGIAKRGHYGSFLLEEWDLLRDIVSAMVRELDVPVTVKIRLLPRMEDTLQLCRVLLGAGAKLL 192
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: A0A8K1CA77_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA77_PYTOL) HSP 1 Score: 171 bits (434), Expect = 5.720e-49 Identity = 90/177 (50.85%), Postives = 118/177 (66.67%), Query Frame = 1
Query: 4 TRIAGSDASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 534
TR+ G + FF ++GSP+ + APMV+ SE AFR L RRHG +L YT M HS FA ++ ++R + F+ +DRPLI QFCGNDP TV+ AARH+EG DAVDLNLGCPQ IARKG YG+FL+ + IV +S+ LS+PVTVKIR +TL+ ++ AGA L+
Sbjct: 22 TRLRGYE-----FFRAIGSPQRVVAPMVDQSELAFRMLTRRHGAELCYTPMFHSRLFA--ESAEYRAKMFEK--HIKDRPLIVQFCGNDPQTVLAAARHVEGHCDAVDLNLGCPQGIARKGRYGSFLMKEKDTVRDIVTTLSQNLSIPVTVKIRIFPDRQETLEFADMIQAAGADLL 189
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: I0Z406_COCSC (FMN-linked oxidoreductase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z406_COCSC) HSP 1 Score: 171 bits (434), Expect = 8.460e-49 Identity = 93/165 (56.36%), Postives = 107/165 (64.85%), Query Frame = 1
Query: 43 FESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLIA 537
F S GSPRY APMV+ SE AFR L RRHG YT MLHS F D +R + F E DRPL+ QFC NDP+T++ AAR +E DA+DLNLGCPQRIAR+G YGAFL+ D L ERIV + LSVPVTVKIR T++ R LE AGA LIA
Sbjct: 19 FRSWGSPRYFVAPMVDQSELAFRMLCRRHGATAAYTPMLHSRLFLQDP--NYRAEHFSTC--EGDRPLMVQFCANDPETLLAAARIVEPHADAIDLNLGCPQRIARRGRYGAFLMDDLPLVERIVRTCAEGLSVPVTVKIRVFPDRQKTVEYARMLERAGASLIA 179
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Match: K3WW65_GLOUD (tRNA-dihydrouridine synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW65_GLOUD) HSP 1 Score: 171 bits (432), Expect = 1.340e-48 Identity = 87/165 (52.73%), Postives = 112/165 (67.88%), Query Frame = 1
Query: 40 FFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTQMLHSGRFAPDKANKFREQRFDGVDEEEDRPLIAQFCGNDPDTVVRAARHIEGVVDAVDLNLGCPQRIARKGNYGAFLLSDPHLCERIVAAMSRELSVPVTVKIRALEKEADTLDLVRRLEGAGAQLI 534
FF ++G+P+ I APMV+ SE AFR L R+HG +L YT M HS FA A +RE+ F+ +DRPLI QFCGNDP TV+ AA+H+EG DAVDLNLGCPQ IARKG YG+FL+ + + IV +S LS+PVTVKIR E +TL+ L+ AG ++
Sbjct: 21 FFHAIGAPKRIVAPMVDQSELAFRMLTRKHGAELCYTPMFHSRLFAESPA--YREKMFE--QHIQDRPLIVQFCGNDPATVLAAAKHVEGHCDAVDLNLGCPQGIARKGRYGSFLMKEKDVVREIVQTLSDNLSIPVTVKIRMFPDEQETLEFCDMLQAAGCDML 181 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9413.17448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9413.17448.1 >prot_S-dermatodea_contig9413.17448.1 ID=prot_S-dermatodea_contig9413.17448.1|Name=mRNA_S-dermatodea_contig9413.17448.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=179bp ATRIAGSDASPRGFFESMGSPRYIAAPMVEHSEAAFRYLVRRHGCDLTYTback to top mRNA from alignment at S-dermatodea_contig9413:454..2469- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9413.17448.1 ID=mRNA_S-dermatodea_contig9413.17448.1|Name=mRNA_S-dermatodea_contig9413.17448.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2016bp|location=Sequence derived from alignment at S-dermatodea_contig9413:454..2469- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9413:454..2469- >mRNA_S-dermatodea_contig9413.17448.1 ID=mRNA_S-dermatodea_contig9413.17448.1|Name=mRNA_S-dermatodea_contig9413.17448.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at S-dermatodea_contig9413:454..2469- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |