prot_S-dermatodea_contig92064.17271.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig92064.17271.1
Unique Nameprot_S-dermatodea_contig92064.17271.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length44
Homology
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: D1J720_ECTSI (Protein PsbN n=37 Tax=Phaeophyceae TaxID=2870 RepID=D1J720_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-20
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 43
            METSTIL+IFVSSLL+GITAYSTYTAFGPGSK LRDPFEEHED
Sbjct:    1 METSTILIIFVSSLLIGITAYSTYTAFGPGSKLLRDPFEEHED 43          
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: PSBN_PHATC (Protein PsbN n=73 Tax=Eukaryota TaxID=2759 RepID=PSBN_PHATC)

HSP 1 Score: 74.3 bits (181), Expect = 7.660e-17
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 43
            MET+TI+VIFVSSLL+GIT YS YTAFGP SK LRDPFEEHED
Sbjct:    1 METATIIVIFVSSLLLGITTYSVYTAFGPASKNLRDPFEEHED 43          
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: B7XBY6_9STRA (Protein PsbN n=12 Tax=root TaxID=1 RepID=B7XBY6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.200e-16
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 0
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 43
            MET+TIL+IFVSSLL+GIT+YS +TAFGP SK LRDPFEEHED
Sbjct:    1 METATILIIFVSSLLLGITSYSIFTAFGPASKNLRDPFEEHED 43          
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: A0A1Z1XBE6_9RHOD (Protein PsbN n=4 Tax=Compsopogonophyceae TaxID=930023 RepID=A0A1Z1XBE6_9RHOD)

HSP 1 Score: 71.6 bits (174), Expect = 8.980e-16
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 43
            MET+T+L IF+SSLL+GITAYS YT+FGP S+ LRDPFEEHED
Sbjct:    1 METATVLSIFISSLLLGITAYSIYTSFGPNSRVLRDPFEEHED 43          
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: A0A7U0KSX8_OLILU (Protein PsbN n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KSX8_OLILU)

HSP 1 Score: 71.6 bits (174), Expect = 8.980e-16
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 43
            METSTIL+IF+SS+L+GIT YS YTAFGP SK LRDPF+EHED
Sbjct:    1 METSTILIIFLSSVLLGITMYSIYTAFGPNSKDLRDPFDEHED 43          
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: PSBN_RHDSA (Protein PsbN n=4 Tax=Cryptophyceae TaxID=3027 RepID=PSBN_RHDSA)

HSP 1 Score: 70.9 bits (172), Expect = 1.820e-15
Identity = 30/43 (69.77%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 43
            MET+T+L++F++SLL+G+T YS YTAFGP SK LRDPFE+HED
Sbjct:    1 METATVLIVFIASLLLGVTGYSVYTAFGPNSKDLRDPFEDHED 43          
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: A0A516ZAG3_9STRA (Protein PsbN n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAG3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.580e-15
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 43
            MET+TI+++FVSSLL+G+T YS Y+AFGPG+K L DPFEEHED
Sbjct:    1 METATIIIVFVSSLLLGVTGYSIYSAFGPGAKSLTDPFEEHED 43          
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: B7T1V3_VAULI (Protein PsbN n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1V3_VAULI)

HSP 1 Score: 70.5 bits (171), Expect = 2.580e-15
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 43
            MET+TILVIFVSSLL+G+TAYS Y AFGP S  LRDPF+EHED
Sbjct:    1 METATILVIFVSSLLLGVTAYSIYIAFGPSSSNLRDPFDEHED 43          
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: PSBN_NEOYE (Protein PsbN n=35 Tax=Rhodophyta TaxID=2763 RepID=PSBN_NEOYE)

HSP 1 Score: 70.1 bits (170), Expect = 3.670e-15
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 43
            MET+T+L IF+SSLL+GIT YS YTAFGP SK LRDPFEEHE+
Sbjct:    1 METATVLSIFISSLLLGITGYSIYTAFGPASKDLRDPFEEHEE 43          
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: A0A516Z9Z4_9STRA (Protein PsbN n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516Z9Z4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.670e-15
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 43
            MET+TIL+IFVSSLL+G+T YS YT+FGP +K L DPFEEHED
Sbjct:    1 METATILIIFVSSLLLGVTGYSIYTSFGPNAKVLADPFEEHED 43          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J720_ECTSI1.660e-2093.02Protein PsbN n=37 Tax=Phaeophyceae TaxID=2870 RepI... [more]
PSBN_PHATC7.660e-1783.72Protein PsbN n=73 Tax=Eukaryota TaxID=2759 RepID=P... [more]
B7XBY6_9STRA2.200e-1681.40Protein PsbN n=12 Tax=root TaxID=1 RepID=B7XBY6_9S... [more]
A0A1Z1XBE6_9RHOD8.980e-1676.74Protein PsbN n=4 Tax=Compsopogonophyceae TaxID=930... [more]
A0A7U0KSX8_OLILU8.980e-1679.07Protein PsbN n=1 Tax=Olisthodiscus luteus TaxID=83... [more]
PSBN_RHDSA1.820e-1569.77Protein PsbN n=4 Tax=Cryptophyceae TaxID=3027 RepI... [more]
A0A516ZAG3_9STRA2.580e-1572.09Protein PsbN n=2 Tax=Dictyochophyceae TaxID=39119 ... [more]
B7T1V3_VAULI2.580e-1579.07Protein PsbN n=1 Tax=Vaucheria litorea TaxID=10926... [more]
PSBN_NEOYE3.670e-1576.74Protein PsbN n=35 Tax=Rhodophyta TaxID=2763 RepID=... [more]
A0A516Z9Z4_9STRA3.670e-1574.42Protein PsbN n=1 Tax=Florenciella parvula TaxID=23... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003398Photosystem II PsbNPFAMPF02468PsbNcoord: 1..43
e-value: 2.1E-21
score: 75.5
IPR003398Photosystem II PsbNPANTHERPTHR35326FAMILY NOT NAMEDcoord: 1..43
IPR003398Photosystem II PsbNHAMAPMF_00293PSII_PsbNcoord: 1..43
score: 17.686
NoneNo IPR availablePANTHERPTHR35326:SF2coord: 1..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePRODOMPD005510coord: 1..43
e-value: 7.0E-15
score: 190.0
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92064contigS-dermatodea_contig92064:185..316 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92064.17271.1mRNA_S-dermatodea_contig92064.17271.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig92064 185..316 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig92064.17271.1 ID=prot_S-dermatodea_contig92064.17271.1|Name=mRNA_S-dermatodea_contig92064.17271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003398PSII_PsbN