mRNA_S-dermatodea_contig92064.17271.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92064.17271.1
Unique NamemRNA_S-dermatodea_contig92064.17271.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: D1J720_ECTSI (Protein PsbN n=37 Tax=Phaeophyceae TaxID=2870 RepID=D1J720_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-20
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 129
            METSTIL+IFVSSLL+GITAYSTYTAFGPGSK LRDPFEEHED
Sbjct:    1 METSTILIIFVSSLLIGITAYSTYTAFGPGSKLLRDPFEEHED 43
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BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: PSBN_PHATC (Protein PsbN n=73 Tax=Eukaryota TaxID=2759 RepID=PSBN_PHATC)

HSP 1 Score: 74.3 bits (181), Expect = 7.660e-17
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 129
            MET+TI+VIFVSSLL+GIT YS YTAFGP SK LRDPFEEHED
Sbjct:    1 METATIIVIFVSSLLLGITTYSVYTAFGPASKNLRDPFEEHED 43
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BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: B7XBY6_9STRA (Protein PsbN n=12 Tax=root TaxID=1 RepID=B7XBY6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.200e-16
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 129
            MET+TIL+IFVSSLL+GIT+YS +TAFGP SK LRDPFEEHED
Sbjct:    1 METATILIIFVSSLLLGITSYSIFTAFGPASKNLRDPFEEHED 43
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BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: A0A1Z1XBE6_9RHOD (Protein PsbN n=4 Tax=Compsopogonophyceae TaxID=930023 RepID=A0A1Z1XBE6_9RHOD)

HSP 1 Score: 71.6 bits (174), Expect = 8.980e-16
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 129
            MET+T+L IF+SSLL+GITAYS YT+FGP S+ LRDPFEEHED
Sbjct:    1 METATVLSIFISSLLLGITAYSIYTSFGPNSRVLRDPFEEHED 43
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BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: A0A7U0KSX8_OLILU (Protein PsbN n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KSX8_OLILU)

HSP 1 Score: 71.6 bits (174), Expect = 8.980e-16
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 129
            METSTIL+IF+SS+L+GIT YS YTAFGP SK LRDPF+EHED
Sbjct:    1 METSTILIIFLSSVLLGITMYSIYTAFGPNSKDLRDPFDEHED 43
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BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: PSBN_RHDSA (Protein PsbN n=4 Tax=Cryptophyceae TaxID=3027 RepID=PSBN_RHDSA)

HSP 1 Score: 70.9 bits (172), Expect = 1.820e-15
Identity = 30/43 (69.77%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 129
            MET+T+L++F++SLL+G+T YS YTAFGP SK LRDPFE+HED
Sbjct:    1 METATVLIVFIASLLLGVTGYSVYTAFGPNSKDLRDPFEDHED 43
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BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: A0A516ZAG3_9STRA (Protein PsbN n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAG3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.580e-15
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 129
            MET+TI+++FVSSLL+G+T YS Y+AFGPG+K L DPFEEHED
Sbjct:    1 METATIIIVFVSSLLLGVTGYSIYSAFGPGAKSLTDPFEEHED 43
[Close]
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: B7T1V3_VAULI (Protein PsbN n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1V3_VAULI)

HSP 1 Score: 70.5 bits (171), Expect = 2.580e-15
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 129
            MET+TILVIFVSSLL+G+TAYS Y AFGP S  LRDPF+EHED
Sbjct:    1 METATILVIFVSSLLLGVTAYSIYIAFGPSSSNLRDPFDEHED 43
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BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: PSBN_NEOYE (Protein PsbN n=35 Tax=Rhodophyta TaxID=2763 RepID=PSBN_NEOYE)

HSP 1 Score: 70.1 bits (170), Expect = 3.670e-15
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 129
            MET+T+L IF+SSLL+GIT YS YTAFGP SK LRDPFEEHE+
Sbjct:    1 METATVLSIFISSLLLGITGYSIYTAFGPASKDLRDPFEEHEE 43
[Close]
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Match: A0A516Z9Z4_9STRA (Protein PsbN n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516Z9Z4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.670e-15
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED 129
            MET+TIL+IFVSSLL+G+T YS YT+FGP +K L DPFEEHED
Sbjct:    1 METATILIIFVSSLLLGVTGYSIYTSFGPNAKVLADPFEEHED 43
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92064.17271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J720_ECTSI1.660e-2093.02Protein PsbN n=37 Tax=Phaeophyceae TaxID=2870 RepI... [more]
PSBN_PHATC7.660e-1783.72Protein PsbN n=73 Tax=Eukaryota TaxID=2759 RepID=P... [more]
B7XBY6_9STRA2.200e-1681.40Protein PsbN n=12 Tax=root TaxID=1 RepID=B7XBY6_9S... [more]
A0A1Z1XBE6_9RHOD8.980e-1676.74Protein PsbN n=4 Tax=Compsopogonophyceae TaxID=930... [more]
A0A7U0KSX8_OLILU8.980e-1679.07Protein PsbN n=1 Tax=Olisthodiscus luteus TaxID=83... [more]
PSBN_RHDSA1.820e-1569.77Protein PsbN n=4 Tax=Cryptophyceae TaxID=3027 RepI... [more]
A0A516ZAG3_9STRA2.580e-1572.09Protein PsbN n=2 Tax=Dictyochophyceae TaxID=39119 ... [more]
B7T1V3_VAULI2.580e-1579.07Protein PsbN n=1 Tax=Vaucheria litorea TaxID=10926... [more]
PSBN_NEOYE3.670e-1576.74Protein PsbN n=35 Tax=Rhodophyta TaxID=2763 RepID=... [more]
A0A516Z9Z4_9STRA3.670e-1574.42Protein PsbN n=1 Tax=Florenciella parvula TaxID=23... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92064contigS-dermatodea_contig92064:185..316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue7.5e-14
Seed eggNOG ortholog2880.D1J720
Preferred namepsbN
KEGG koko:K02715
EggNOG free text desc.photosynthesis
EggNOG OGs2EFVA@1,2S8EW@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons1
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925393.7420278-CDS-S-dermatodea_contig92064:184..3161622925393.7420278-CDS-S-dermatodea_contig92064:184..316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92064 185..316 +
1694079903.646696-CDS-S-dermatodea_contig92064:184..3161694079903.646696-CDS-S-dermatodea_contig92064:184..316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92064 185..316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92064.17271.1prot_S-dermatodea_contig92064.17271.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92064 185..316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92064.17271.1

>prot_S-dermatodea_contig92064.17271.1 ID=prot_S-dermatodea_contig92064.17271.1|Name=mRNA_S-dermatodea_contig92064.17271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
METSTILVIFVSSLLVGITAYSTYTAFGPGSKFLRDPFEEHED*
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mRNA from alignment at S-dermatodea_contig92064:185..316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92064.17271.1 ID=mRNA_S-dermatodea_contig92064.17271.1|Name=mRNA_S-dermatodea_contig92064.17271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at S-dermatodea_contig92064:185..316+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAACATCAACTATTTTAGTAATTTTTGTCTCTAGTTTATTAGTTGG
AATAACGGCTTACTCTACTTATACAGCATTTGGACCTGGTTCGAAATTTT
TAAGAGATCCCTTTGAAGAACATGAGGATTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig92064:185..316+

>mRNA_S-dermatodea_contig92064.17271.1 ID=mRNA_S-dermatodea_contig92064.17271.1|Name=mRNA_S-dermatodea_contig92064.17271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig92064:185..316+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAACATCAACTATTTTAGTAATTTTTGTCTCTAGTTTATTAGTTGG
AATAACGGCTTACTCTACTTATACAGCATTTGGACCTGGTTCGAAATTTT
TAAGAGATCCCTTTGAAGAACATGAGGATTAAATGGAAACATCAACTATT
TTAGTAATTTTTGTCTCTAGTTTATTAGTTGGAATAACGGCTTACTCTAC
TTATACAGCATTTGGACCTGGTTCGAAATTTTTAAGAGATCCCTTTGAAG
AACATGAGGATTAA
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