prot_S-dermatodea_contig9206.17269.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9206.17269.1
Unique Nameprot_S-dermatodea_contig9206.17269.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length188
Homology
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A6H5L3V5_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.090e-80
Identity = 129/188 (68.62%), Postives = 152/188 (80.85%), Query Frame = 0
Query:    1 MIAMLRRPPVRCQAVADSLLATTRAGAAATERDARATQGCADIPTECLSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGREEAPLGWGEGRDGDEAAVGAAIGRKRRPDAVQHTPAHGFFQQKK 188
            M +++RR P+RCQA+AD+++A  + G + T R+  A++ C DIPTE LSLD+DFVVINKPADVRM G+F V VDKLIR+ CPTL DKELKWVHQLDFATSGVLCVALHR+AA R CEAFRERR +KSYLAVV+G VDPE+V  REE P GW EGRDG+         RKRRPD+VQHTPAHGFFQ+KK
Sbjct:   32 MASLMRRSPIRCQALADTVMA--QRGLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPDGWREGRDGNGXXXXXXXXRKRRPDSVQHTPAHGFFQRKK 217          
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A7S3H910_9STRA (Hypothetical protein (Fragment) n=3 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H910_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.400e-23
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 0
Query:   48 LSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGREEAPLGWGEGRDGDEAAVGAAIGRKRRPDAVQHTPA 180
            L LD ++ V++KP  VRMTGDF + ++KL+ H  P +    LKW+HQLDFATSGVLCV L+R AA  A  AF  R V+K YLAV++G V+ +     E  P    E    DEA   +  G+++      +TPA
Sbjct:   49 LYLDTNYCVVDKPHKVRMTGDFSITMEKLLLHWIPGIQIGSLKWIHQLDFATSGVLCVGLNRAAAAVASAAFEARTVKKQYLAVLQGHVNLDDWPILEAKPAYVDE----DEADDISIPGKRKHEKIESNTPA 177          
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A482SV00_9ARCH (PseudoU_synth_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV00_9ARCH)

HSP 1 Score: 96.3 bits (238), Expect = 1.830e-20
Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 0
Query:   42 DIPTECLSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCP-----TLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGREEAP 148
            D+    L+ ++ F VI+KPADVRM G+F V V+KL+  H           K+ KWVHQLDFATSG LCVAL R+ A  A   F  R V K YL+V+ G +D +    RE  P
Sbjct:   24 DVQLNILAENKHFYVIDKPADVRMDGNFDVTVEKLLLLHIKKPDGSATTPKDFKWVHQLDFATSGALCVALTREGAAAASSCFEHREVEKHYLSVLSGTLDLDKYCYREYEP 135          
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A7S3EEX3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEX3_9RHOD)

HSP 1 Score: 91.7 bits (226), Expect = 4.510e-19
Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 0
Query:   51 DEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKW--------VHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDP 138
            DE +VV+NKPADVRM G+F V V+KL+R H   L  K+  W        VHQLD+ATSGVL +AL R +A   C+ F  R V+K YLA+V G + P
Sbjct:   39 DEGYVVVNKPADVRMDGEFDVTVEKLVRAH---LTKKDATWEKEGKIRFVHQLDYATSGVLLLALTRRSAAFTCKQFERRTVQKKYLALVYGTIPP 131          
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A2R5G0V4_9STRA (Tubulin monoglycylase TTLL3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0V4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.560e-18
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 0
Query:   46 ECLSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGREEAPLGWGEGRDGDEAAV 162
            + L   +D +VI+KPAD R+ GDF V V+  ++   P  A K  +WVHQLDFATSGVLC+ L R  AG A + F+ER  RK Y+A+V+G + P   + +   P    +G   ++ +V
Sbjct:  112 DILHQSDDHLVIDKPADFRLDGDFPVTVENFVKKIIPEEA-KRPRWVHQLDFATSGVLCIGLCRRGAGNASKLFQERLTRKYYVALVKGKLRPAKPAAKRPLPFVMSQGDAAEQTSV 227          
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A7S2RMN8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RMN8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.950e-18
Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = 0
Query:   42 DIPTECLSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGR 144
            D+  + L+ ++D++V+NKP D+R+ GDF V ++K +      L DK ++WVHQLDFATSG +C+ L+R  AG A + F  R+ RK YLA+V G +D    +G+
Sbjct:   32 DLKVDILAENQDYLVVNKPCDLRLDGDFDVTLEKFVLGRVKGL-DK-VRWVHQLDFATSGCICMGLNRRGAGNASKMFAGRKTRKYYLALVYGHLDRGLFAGK 132          
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: W2Q6J3_PHYPN (PseudoU_synth_2 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN)

HSP 1 Score: 88.6 bits (218), Expect = 3.710e-17
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0
Query:   48 LSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEG 134
            LS DE FVV+NK  D RM G F V ++K +    P +  ++ +W+HQLDFATSGVL V  +++A    C  FRE++V+K YLAVV+G
Sbjct:   98 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPQV--EKFRWIHQLDFATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQG 182          
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: G4ZW01_PHYSP (Pseudouridine synthase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZW01_PHYSP)

HSP 1 Score: 87.4 bits (215), Expect = 6.980e-17
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0
Query:   48 LSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEG 134
            LS DE FVV+NK  D RM G+F V ++K +    P +   + +W+HQLDFATSGVL V   ++A    C  FRE++V+K YLAVV G
Sbjct:   98 LSKDEHFVVLNKGPDERMDGEFDVTLEKALARDFPDVP--KFRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVRG 182          
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A7S1TJJ5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TJJ5_9RHOD)

HSP 1 Score: 81.6 bits (200), Expect = 9.370e-17
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 0
Query:   48 LSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKEL------------KWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAV 131
            L   E ++V++KPADVRM GDF V V+KL        A+KEL            K +HQLD+ATSGVL + L R+AA  AC+ F  RRV+K+YLA+
Sbjct:   28 LFASERYLVVDKPADVRMDGDFPVTVEKL--------AEKELQARMGVQEVPRTKMIHQLDYATSGVLLLGLTREAARHACQLFEARRVKKTYLAI 115          
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A2D4C2U4_PYTIN (Protein kinase domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2U4_PYTIN)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-16
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 0
Query:   52 EDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEG 134
            E  +V+NK  D R+ G+F   ++K +    P + DK  +W+HQLDFATSGV+C+ L RDA   AC  FRE+RV+K YLAVV G
Sbjct:  419 EHLLVLNKREDHRLDGEFDATIEKALHRDFPEI-DK-FRWIHQLDFATSGVMCIGLDRDATSVACRLFREKRVQKEYLAVVRG 499          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3V5_9PHAE1.090e-8068.62PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S3H910_9STRA7.400e-2344.36Hypothetical protein (Fragment) n=3 Tax=Spumella e... [more]
A0A482SV00_9ARCH1.830e-2046.43PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S3EEX3_9RHOD4.510e-1951.04Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2R5G0V4_9STRA1.560e-1841.88Tubulin monoglycylase TTLL3 n=1 Tax=Hondaea fermen... [more]
A0A7S2RMN8_9STRA4.950e-1843.69Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
W2Q6J3_PHYPN3.710e-1749.43PseudoU_synth_2 domain-containing protein n=16 Tax... [more]
G4ZW01_PHYSP6.980e-1749.43Pseudouridine synthase n=1 Tax=Phytophthora sojae ... [more]
A0A7S1TJJ5_9RHOD9.370e-1747.92Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A2D4C2U4_PYTIN1.100e-1650.60Protein kinase domain-containing protein n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 37..181
e-value: 3.3E-22
score: 81.1
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 49..167
NoneNo IPR availablePANTHERPTHR21600:SF41RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 1coord: 49..167
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..188
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 53..134
e-value: 7.7E-18
score: 65.1
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 43..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9206contigS-dermatodea_contig9206:234..1752 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9206.17269.1mRNA_S-dermatodea_contig9206.17269.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9206 234..1867 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9206.17269.1 ID=prot_S-dermatodea_contig9206.17269.1|Name=mRNA_S-dermatodea_contig9206.17269.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=188bp
MIAMLRRPPVRCQAVADSLLATTRAGAAATERDARATQGCADIPTECLSL
DEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATS
GVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGREEAPLG
WGEGRDGDEAAVGAAIGRKRRPDAVQHTPAHGFFQQKK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR020103PsdUridine_synth_cat_dom_sf