mRNA_S-dermatodea_contig9206.17269.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A6H5L3V5_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3V5_9PHAE) HSP 1 Score: 256 bits (655), Expect = 4.710e-80 Identity = 133/197 (67.51%), Postives = 157/197 (79.70%), Query Frame = 2
Query: 92 VGCLCSLSMIA-MLRRPPVRCQAVADSLLATTRAGAAATERDARATQGCADIPTECLSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGREEAPLGWGEGRDGDEAAVGAAIGRKRRPDAVQHTPAHGFFQQKK 679
V + S SM+A ++RR P+RCQA+AD+++A + G + T R+ A++ C DIPTE LSLD+DFVVINKPADVRM G+F V VDKLIR+ CPTL DKELKWVHQLDFATSGVLCVALHR+AA R CEAFRERR +KSYLAVV+G VDPE+V REE P GW EGRDG+ RKRRPD+VQHTPAHGFFQ+KK
Sbjct: 23 VALVSSGSMMASLMRRSPIRCQALADTVMA--QRGLSMTSRELAASRQCGDIPTETLSLDDDFVVINKPADVRMDGNFDVAVDKLIRYWCPTLEDKELKWVHQLDFATSGVLCVALHREAAARGCEAFRERRAKKSYLAVVQGAVDPESVPRREEEPDGWREGRDGNGXXXXXXXXRKRRPDSVQHTPAHGFFQRKK 217
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A7S3H910_9STRA (Hypothetical protein (Fragment) n=3 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H910_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.190e-22 Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 2
Query: 257 LSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGREEAPLGWGEGRDGDEAAVGAAIGRKRRPDAVQHTPA 655
L LD ++ V++KP VRMTGDF + ++KL+ H P + LKW+HQLDFATSGVLCV L+R AA A AF R V+K YLAV++G V+ + E P E DEA + G+++ +TPA
Sbjct: 49 LYLDTNYCVVDKPHKVRMTGDFSITMEKLLLHWIPGIQIGSLKWIHQLDFATSGVLCVGLNRAAAAVASAAFEARTVKKQYLAVLQGHVNLDDWPILEAKPAYVDE----DEADDISIPGKRKHEKIESNTPA 177
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A482SV00_9ARCH (PseudoU_synth_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV00_9ARCH) HSP 1 Score: 96.3 bits (238), Expect = 5.250e-20 Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 2
Query: 239 DIPTECLSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCP-----TLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGREEAP 559
D+ L+ ++ F VI+KPADVRM G+F V V+KL+ H K+ KWVHQLDFATSG LCVAL R+ A A F R V K YL+V+ G +D + RE P
Sbjct: 24 DVQLNILAENKHFYVIDKPADVRMDGNFDVTVEKLLLLHIKKPDGSATTPKDFKWVHQLDFATSGALCVALTREGAAAASSCFEHREVEKHYLSVLSGTLDLDKYCYREYEP 135
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A7S3EEX3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EEX3_9RHOD) HSP 1 Score: 91.7 bits (226), Expect = 1.250e-18 Identity = 49/96 (51.04%), Postives = 62/96 (64.58%), Query Frame = 2
Query: 266 DEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKW--------VHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDP 529
DE +VV+NKPADVRM G+F V V+KL+R H L K+ W VHQLD+ATSGVL +AL R +A C+ F R V+K YLA+V G + P
Sbjct: 39 DEGYVVVNKPADVRMDGEFDVTVEKLVRAH---LTKKDATWEKEGKIRFVHQLDYATSGVLLLALTRRSAAFTCKQFERRTVQKKYLALVYGTIPP 131
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A2R5G0V4_9STRA (Tubulin monoglycylase TTLL3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0V4_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 4.650e-18 Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 2
Query: 251 ECLSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGREEAPLGWGEGRDGDEAAV 601
+ L +D +VI+KPAD R+ GDF V V+ ++ P A K +WVHQLDFATSGVLC+ L R AG A + F+ER RK Y+A+V+G + P + + P +G ++ +V
Sbjct: 112 DILHQSDDHLVIDKPADFRLDGDFPVTVENFVKKIIPEEA-KRPRWVHQLDFATSGVLCIGLCRRGAGNASKLFQERLTRKYYVALVKGKLRPAKPAAKRPLPFVMSQGDAAEQTSV 227
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A7S2RMN8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RMN8_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.360e-17 Identity = 45/103 (43.69%), Postives = 69/103 (66.99%), Query Frame = 2
Query: 239 DIPTECLSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVVDPEAVSGR 547
D+ + L+ ++D++V+NKP D+R+ GDF V ++K + L DK ++WVHQLDFATSG +C+ L+R AG A + F R+ RK YLA+V G +D +G+
Sbjct: 32 DLKVDILAENQDYLVVNKPCDLRLDGDFDVTLEKFVLGRVKGL-DK-VRWVHQLDFATSGCICMGLNRRGAGNASKMFAGRKTRKYYLALVYGHLDRGLFAGK 132
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A1V9YKD3_9STRA (RNA pseudouridylate synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YKD3_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.470e-17 Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 2
Query: 83 RFRVGCLCSLSMIAMLRRPPVRCQAVADSLLATTRAGAAATERDARATQGCADIPTECLSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEGVV 523
R R L LS L+ P + + + DS + R G ++ + + LS ++VINK DVR+ GDF V ++K + P + + +W+HQLDFATSG++C+ L ++A AC F+++ V K YLA+V G +
Sbjct: 7 RRRASSLSKLSSAVQLKAPRKQEEQLDDSAIQDNRGGPLTLDQ----------LKLQVLSQSPHYLVINKGPDVRLDGDFNVTIEKALARDFPEIP--KFRWIHQLDFATSGIMCIGLTKEATAAACALFQKKCVEKEYLALVHGTM 141
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: W2Q6J3_PHYPN (PseudoU_synth_2 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2Q6J3_PHYPN) HSP 1 Score: 88.6 bits (218), Expect = 1.030e-16 Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 2
Query: 257 LSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEG 517
LS DE FVV+NK D RM G F V ++K + P + ++ +W+HQLDFATSGVL V +++A C FRE++V+K YLAVV+G
Sbjct: 98 LSKDEHFVVLNKGPDERMDGAFDVTLEKALARDFPQV--EKFRWIHQLDFATSGVLVVGANKEATATGCRLFREKQVQKEYLAVVQG 182
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: G4ZW01_PHYSP (Pseudouridine synthase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZW01_PHYSP) HSP 1 Score: 87.4 bits (215), Expect = 1.900e-16 Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 2
Query: 257 LSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKELKWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAVVEG 517
LS DE FVV+NK D RM G+F V ++K + P + + +W+HQLDFATSGVL V ++A C FRE++V+K YLAVV G
Sbjct: 98 LSKDEHFVVLNKGPDERMDGEFDVTLEKALARDFPDVP--KFRWIHQLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVRG 182
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Match: A0A7S1TJJ5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TJJ5_9RHOD) HSP 1 Score: 81.6 bits (200), Expect = 2.370e-16 Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 2
Query: 257 LSLDEDFVVINKPADVRMTGDFKVNVDKLIRHHCPTLADKEL------------KWVHQLDFATSGVLCVALHRDAAGRACEAFRERRVRKSYLAV 508
L E ++V++KPADVRM GDF V V+KL A+KEL K +HQLD+ATSGVL + L R+AA AC+ F RRV+K+YLA+
Sbjct: 28 LFASERYLVVDKPADVRMDGDFPVTVEKL--------AEKELQARMGVQEVPRTKMIHQLDYATSGVLLLGLTREAARHACQLFEARRVKKTYLAI 115 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9206.17269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9206.17269.1 >prot_S-dermatodea_contig9206.17269.1 ID=prot_S-dermatodea_contig9206.17269.1|Name=mRNA_S-dermatodea_contig9206.17269.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=188bp MIAMLRRPPVRCQAVADSLLATTRAGAAATERDARATQGCADIPTECLSLback to top mRNA from alignment at S-dermatodea_contig9206:234..1867- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9206.17269.1 ID=mRNA_S-dermatodea_contig9206.17269.1|Name=mRNA_S-dermatodea_contig9206.17269.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1634bp|location=Sequence derived from alignment at S-dermatodea_contig9206:234..1867- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9206:234..1867- >mRNA_S-dermatodea_contig9206.17269.1 ID=mRNA_S-dermatodea_contig9206.17269.1|Name=mRNA_S-dermatodea_contig9206.17269.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at S-dermatodea_contig9206:234..1867- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |