prot_S-dermatodea_contig9126.17203.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9126.17203.1
Unique Nameprot_S-dermatodea_contig9126.17203.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length331
Homology
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 6.020e-105
Identity = 171/258 (66.28%), Postives = 201/258 (77.91%), Query Frame = 0
Query:    1 MDHLREAYASS--DEGEIEENVPTAPALGELPPELLSMFSDS-----------EYDLATERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHG-SKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVH 244
            MDHL EAYASS  ++ +IEE  P    LG LP ELL++F DS           EYDLATERRRAE+RAG+ +WVRRFPHERGNWPT+ FIPVPNSAAF S+AEASV+ FR+RLA AW E HG ++    GKKR+R+G   SN+    S GK +PPEVV+NDMDPSG+QHLSLSKT  LRAH+I PFV+ L+EAVKSSR FTAS VSGYDVLVN+DKTRSF+CLRVRGGRQ++L LI KVD LM RFKQS+YYE  ++H
Sbjct:    1 MDHLLEAYASSSSEDEKIEEKDPNPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAEERAGNIRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWREGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVIIMH 258          
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 7.380e-97
Identity = 164/266 (61.65%), Postives = 199/266 (74.81%), Query Frame = 0
Query:    1 MDHLREAYASS--DEGEIEENVPTAPALGELPPELLSMFSDSEYDLATERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHG-SKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGDVSSYVNSSAQ 263
            MDHL EAYASS  D+ +IEEN P    LG LP ELL++F DSEYDLATERRRAE+RAG+  WVRRFPHERGNWPT+ FIPVPNS+AF S+AEASV+ FR+RLA AW +RHG ++    G+KR+ +G   SN+    S GK +PPEVV+N+MDPSG+QHLSLSKT  LRAH+I+PFVQ L++AVKSSR                         RVRGGR+++L LI KVD LM RFKQS YYE+P+VHVSVASVLGDVS+YV+SS++
Sbjct:    1 MDHLLEAYASSSSDDEKIEENDPKPAVLGALPSELLTLFKDSEYDLATERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAAWRDRHGRAEGGKGGRKRTSDGRRRSNQASASSAGKLDPPEVVMNNMDPSGRQHLSLSKTTALRAHQIDPFVQGLKDAVKSSR-------------------------RVRGGRKMVLGLIAKVDPLMRRFKQSGYYEEPIVHVSVASVLGDVSTYVSSSSR 241          
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A4D9D6D2_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.050e-25
Identity = 82/228 (35.96%), Postives = 122/228 (53.51%), Query Frame = 0
Query:   55 AGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKR----SRNGHPSSNRKGEP----SLGKHEPPEV--VVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIV------SGYDVLVNDDKTRSFLCLRVR-GGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGDVSSYVNSSAQGG 265
            A    W+R  PH  GNW T+ +I VPN+   V +A+A V + RRRL        G +     KK       N  PS++   E       G+ E  E   + +D + SGQ HLSLS+TV LR++ +EPFV  L +A+  +R FT  +        G  +LVNDD++RSF+ + V  GG   + Q++  VD ++ +++Q  YY   + H+SVA+V GDVS    + A+ G
Sbjct:  132 ASTVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGWQEKKELVENDLNPVPSADSSDEDXXXXGAGEEEGRESRHLPSDQETSGQ-HLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGEGLLVNDDRSRSFVTVPVEEGGEGRLRQVVESVDEVLVKYRQPPYYRGALFHISVAAVKGDVSEAWGAGARAG 358          
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A836CMF3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.860e-23
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 0
Query:  151 SGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVAS 249
            +G  HLSLS+   LRAH++EPF   L+ A   +R F   +   Y+VLVNDD+TRSF+CL+V GG   IL LIG+V+  +  F+Q  YYEDP +H+SVAS
Sbjct:  165 AGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263          
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: G4YH94_PHYSP (U6 snRNA phosphodiesterase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH94_PHYSP)

HSP 1 Score: 103 bits (258), Expect = 1.650e-22
Identity = 73/211 (34.60%), Postives = 105/211 (49.76%), Query Frame = 0
Query:   43 DLATERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGD 253
            ++AT+     +R  + QW R FPH  GNWP++  I +P +     +A+ ++ D  + L        G    +   +  R G  SS   G                    G  HLSLS+   L   +IE FV +L  A+K  + F+ ++  G  VLVNDDKTRSFL LRV  G Q   Q++  VD  +  FKQ  YY+DP+ HVS+AS +G+
Sbjct:   38 EVATQIGTKRKRPDEPQWKRAFPHVDGNWPSHVRIDIPVTEELREMAKCAI-DRAQELV-------GENVTLVPFEELRLGESSSTGSG--------------------GGLHLSLSRAFILTYDQIEGFVDSLHTALKWRQRFSVTL-EGALVLVNDDKTRSFLALRVSAGAQQFNQVLRCVDQCLACFKQPTYYQDPIPHVSIASSMGE 219          
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A5D6XW39_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW39_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.930e-21
Identity = 65/193 (33.68%), Postives = 92/193 (47.67%), Query Frame = 0
Query:   60 WVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLG 252
            W+R F H  GNWP++  +        +   +A + +   R+    ++  G++ A+                             V  D    G  HLSLS+  TLR  +I PFV  L+ A+K  R F  S+ +G  VLVND++TRSFL LRV  G + +L  +  VD  M  F    YYEDP+ HVS+AS LG
Sbjct:   57 WIRAFAHVEGNWPSHVHV-------IIGAGDAELRELCGRVVSRAQQELGTRLAL-----------------------------VPMDSSELGGVHLSLSRPFTLRYEQITPFVLELRAALKWRRRFVLSL-AGATVLVNDERTRSFLALRVADGEREVLATLKCVDACMKHFALPVYYEDPIPHVSIASCLG 212          
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: W2QD81_PHYPN (U6 snRNA phosphodiesterase n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QD81_PHYPN)

HSP 1 Score: 98.2 bits (243), Expect = 2.710e-20
Identity = 81/228 (35.53%), Postives = 114/228 (50.00%), Query Frame = 0
Query:   35 SMFSDSEYDLA---------TERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGD 253
            S  +DSE + A         T+R+R+++R    QW R FPH  GNWP++  I VP            V+D  R LAR   ER      I G+        + +      LG  EP     N +      HLSLS+   L  ++I  FV +L+ A+K  + F  ++     VLVND+KTRSFL LRV  G Q   Q++  V+  + RF+   YY+DP+ HVS+AS LG+
Sbjct:   20 SSSTDSEVECAHAGEDAHVGTKRKRSDER----QWKRAFPHVDGNWPSHVRIDVP------------VSDELRELARYAIERA---QDIVGE--------AVSLVPFEELGLSEPSTEANNTL------HLSLSRPFVLTYNQINGFVDSLRAALKWQQRFNVTLRRAL-VLVNDEKTRSFLALRVDEGEQQFTQVLRCVNQCLSRFELPTYYKDPIPHVSIASSLGE 213          
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A6A4AHD6_9STRA (U6 snRNA phosphodiesterase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AHD6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.910e-20
Identity = 70/201 (34.83%), Postives = 106/201 (52.74%), Query Frame = 0
Query:   53 QRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGD 253
            +R+ + QW R FP+  GNWP++  I +P +     +A+ ++        RA +E  G    +   +  R G  SS+R  +  L                   HLSLS+   L   +IE FV +L+ A+K  + F+ ++  G  VLVNDD+TRSFL LRV  G Q + Q++  VD  + RF+   YYEDP+ HVS+AS +G+
Sbjct:   50 KRSVEPQWKRAFPNVDGNWPSHVRIDIPVTEGLREIAKCAID-------RA-QELMGDIVTLVPFEELRLGE-SSSRHSDNGL-------------------HLSLSRPFVLTFDQIEGFVDSLRSALKWRQRFSVTL-QGALVLVNDDRTRSFLSLRVSEGEQQLKQVLRCVDQCLARFELPTYYEDPIPHVSIASSMGE 221          
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A6P8QU68_GEOSA (U6 snRNA phosphodiesterase n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8QU68_GEOSA)

HSP 1 Score: 98.2 bits (243), Expect = 4.680e-20
Identity = 84/300 (28.00%), Postives = 127/300 (42.33%), Query Frame = 0
Query:   29 LPPELLSMFSDSEYDLATERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGDVSSYVNSSAQGGPKGSGQAGGKSQRKVIDSEGRHAVDKSNIEEKGVALEALEALL--PVRAVACKAGTTLFEAPL 326
            +P  +L+MF DS+     E    +  A     +R FPHERGNW TY ++P   S  F  + +  +   R                                    + G      + +  M+   + H+SLS+TV LR H I PFVQ+L++ + S   F   +V    V  N +KTR+FL L V  G   ILQLI +VD ++  F    +Y++P  H+S+A  +GD+S  +N                         GR   D   ++E     E    LL  P++ + CKAG  ++  PL
Sbjct:   60 VPDSVLNMFQDSK-----EEHHCDDSARHGGRMRNFPHERGNWATYVYMPYETSEEFFDLLDLLLTHTR------------------------------------TYG------LSLVRME---EFHISLSQTVVLRHHWINPFVQSLRDRLLSVHRFFC-VVDEVKVYTNQEKTRTFLGLAVSSGHMQILQLISEVDRVLEEFNLQTFYKNPSFHISLAWCIGDLSDKLN-------------------------GRCLQD---LQEMVNRFEDASVLLRCPMQQICCKAGNKIYSFPL 280          
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A7S2UZE3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZE3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.670e-19
Identity = 43/101 (42.57%), Postives = 66/101 (65.35%), Query Frame = 0
Query:  153 QQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGD 253
            + H+SLS+   LR H I+P V ALQ+A+ S+  FT  +   ++VL ND  TRSF+CL++  G  L+  L+ +VD ++ +F+   YY++   H+SVAS LGD
Sbjct:   69 KHHISLSRPFVLRYHHIDPLVAALQQALSSAPSFTVEVQGEWEVLTNDQGTRSFVCLKIGPGSSLLEDLVDRVDGVLQKFRAPVYYQEKKFHISVASALGD 169          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRL4_ECTSI6.020e-10566.28U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus si... [more]
A0A6H5K6W9_9PHAE7.380e-9761.65U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp... [more]
A0A4D9D6D2_9STRA1.050e-2535.96U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochlorops... [more]
A0A836CMF3_9STRA6.860e-2351.52U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema min... [more]
G4YH94_PHYSP1.650e-2234.60U6 snRNA phosphodiesterase n=1 Tax=Phytophthora so... [more]
A0A5D6XW39_9STRA2.930e-2133.68U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brass... [more]
W2QD81_PHYPN2.710e-2035.53U6 snRNA phosphodiesterase n=6 Tax=Phytophthora pa... [more]
A0A6A4AHD6_9STRA3.910e-2034.83U6 snRNA phosphodiesterase n=4 Tax=Phytophthora Ta... [more]
A0A6P8QU68_GEOSA4.680e-2028.00U6 snRNA phosphodiesterase n=2 Tax=Geotrypetes ser... [more]
A0A7S2UZE3_9STRA1.670e-1942.57U6 snRNA phosphodiesterase 1 n=1 Tax=Fibrocapsa ja... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027521U6 snRNA phosphodiesterase Usb1PFAMPF09749HVSLcoord: 29..271
e-value: 1.1E-35
score: 123.3
IPR027521U6 snRNA phosphodiesterase Usb1PANTHERPTHR13522UNCHARACTERIZEDcoord: 17..326

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9126contigS-dermatodea_contig9126:567..4600 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9126.17203.1mRNA_S-dermatodea_contig9126.17203.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9126 519..4954 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9126.17203.1 ID=prot_S-dermatodea_contig9126.17203.1|Name=mRNA_S-dermatodea_contig9126.17203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=331bp
MDHLREAYASSDEGEIEENVPTAPALGELPPELLSMFSDSEYDLATERRR
AEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRL
ARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDP
SGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVND
DKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASV
LGDVSSYVNSSAQGGPKGSGQAGGKSQRKVIDSEGRHAVDKSNIEEKGVA
LEALEALLPVRAVACKAGTTLFEAPLLPDH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027521Usb1