mRNA_S-dermatodea_contig9126.17203.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9126.17203.1
Unique NamemRNA_S-dermatodea_contig9126.17203.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 2.900e-103
Identity = 171/258 (66.28%), Postives = 201/258 (77.91%), Query Frame = 1 
Query:   49 MDHLREAYASS--DEGEIEENVPTAPALGELPPELLSMFSDS-----------EYDLATERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHG-SKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVH 780
            MDHL EAYASS  ++ +IEE  P    LG LP ELL++F DS           EYDLATERRRAE+RAG+ +WVRRFPHERGNWPT+ FIPVPNSAAF S+AEASV+ FR+RLA AW E HG ++    GKKR+R+G   SN+    S GK +PPEVV+NDMDPSG+QHLSLSKT  LRAH+I PFV+ L+EAVKSSR FTAS VSGYDVLVN+DKTRSF+CLRVRGGRQ++L LI KVD LM RFKQS+YYE  ++H
Sbjct:    1 MDHLLEAYASSSSEDEKIEEKDPNPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAEERAGNIRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWREGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVIIMH 258
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BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 3.240e-95
Identity = 164/266 (61.65%), Postives = 199/266 (74.81%), Query Frame = 1 
Query:   49 MDHLREAYASS--DEGEIEENVPTAPALGELPPELLSMFSDSEYDLATERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHG-SKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGDVSSYVNSSAQ 837
            MDHL EAYASS  D+ +IEEN P    LG LP ELL++F DSEYDLATERRRAE+RAG+  WVRRFPHERGNWPT+ FIPVPNS+AF S+AEASV+ FR+RLA AW +RHG ++    G+KR+ +G   SN+    S GK +PPEVV+N+MDPSG+QHLSLSKT  LRAH+I+PFVQ L++AVKSSR                         RVRGGR+++L LI KVD LM RFKQS YYE+P+VHVSVASVLGDVS+YV+SS++
Sbjct:    1 MDHLLEAYASSSSDDEKIEENDPKPAVLGALPSELLTLFKDSEYDLATERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAAWRDRHGRAEGGKGGRKRTSDGRRRSNQASASSAGKLDPPEVVMNNMDPSGRQHLSLSKTTALRAHQIDPFVQGLKDAVKSSR-------------------------RVRGGRKMVLGLIAKVDPLMRRFKQSGYYEEPIVHVSVASVLGDVSTYVSSSSR 241
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BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A4D9D6D2_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 9.300e-25
Identity = 82/228 (35.96%), Postives = 122/228 (53.51%), Query Frame = 1 
Query:  211 AGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKR----SRNGHPSSNRKGEP----SLGKHEPPEV--VVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIV------SGYDVLVNDDKTRSFLCLRVR-GGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGDVSSYVNSSAQGG 843
            A    W+R  PH  GNW T+ +I VPN+   V +A+A V + RRRL        G +     KK       N  PS++   E       G+ E  E   + +D + SGQ HLSLS+TV LR++ +EPFV  L +A+  +R FT  +        G  +LVNDD++RSF+ + V  GG   + Q++  VD ++ +++Q  YY   + H+SVA+V GDVS    + A+ G
Sbjct:  132 ASTVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGWQEKKELVENDLNPVPSADSSDEDXXXXGAGEEEGRESRHLPSDQETSGQ-HLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGEGLLVNDDRSRSFVTVPVEEGGEGRLRQVVESVDEVLVKYRQPPYYRGALFHISVAAVKGDVSEAWGAGARAG 358
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BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: G4YH94_PHYSP (U6 snRNA phosphodiesterase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH94_PHYSP)

HSP 1 Score: 105 bits (261), Expect = 3.790e-22
Identity = 84/260 (32.31%), Postives = 123/260 (47.31%), Query Frame = 1 
Query:   31 VRAYRSMDHLREAYAS-SDEGEIEENVPTAPALGELPPELLSMFSDSEYDLATERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGD 807
            V AY S     +  AS S E E+EE+              + + ++    + T+R+R ++     QW R FPH  GNWP++  I +P +     +A+ ++ D  + L        G    +   +  R G  SS   G                    G  HLSLS+   L   +IE FV +L  A+K  + F+ ++  G  VLVNDDKTRSFL LRV  G Q   Q++  VD  +  FKQ  YY+DP+ HVS+AS +G+
Sbjct:    5 VAAYGSSSEASDDAASVSSEDEVEESTS------------VELSAEVATQIGTKRKRPDE----PQWKRAFPHVDGNWPSHVRIDIPVTEELREMAKCAI-DRAQELV-------GENVTLVPFEELRLGESSSTGSG--------------------GGLHLSLSRAFILTYDQIEGFVDSLHTALKWRQRFSVTL-EGALVLVNDDKTRSFLALRVSAGAQQFNQVLRCVDQCLACFKQPTYYQDPIPHVSIASSMGE 219
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BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A836CMF3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 4.780e-22
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:  499 SGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVAS 795
            +G  HLSLS+   LRAH++EPF   L+ A   +R F   +   Y+VLVNDD+TRSF+CL+V GG   IL LIG+V+  +  F+Q  YYEDP +H+SVAS
Sbjct:  165 AGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263
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BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A5D6XW39_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW39_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.580e-20
Identity = 65/193 (33.68%), Postives = 92/193 (47.67%), Query Frame = 1 
Query:  226 WVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLG 804
            W+R F H  GNWP++  +        +   +A + +   R+    ++  G++ A+                             V  D    G  HLSLS+  TLR  +I PFV  L+ A+K  R F  S+ +G  VLVND++TRSFL LRV  G + +L  +  VD  M  F    YYEDP+ HVS+AS LG
Sbjct:   57 WIRAFAHVEGNWPSHVHV-------IIGAGDAELRELCGRVVSRAQQELGTRLAL-----------------------------VPMDSSELGGVHLSLSRPFTLRYEQITPFVLELRAALKWRRRFVLSL-AGATVLVNDERTRSFLALRVADGEREVLATLKCVDACMKHFALPVYYEDPIPHVSIASCLG 212
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BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A6J3DQK9_AYTFU (U6 snRNA phosphodiesterase n=14 Tax=Anseriformes TaxID=8826 RepID=A0A6J3DQK9_AYTFU)

HSP 1 Score: 99.4 bits (246), Expect = 6.640e-20
Identity = 71/234 (30.34%), Postives = 107/234 (45.73%), Query Frame = 1 
Query:  109 PTAPALGELPPELLSMFSDSEYDLATERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGDV 810
            PTA A   +P  +L+MF + E     E R AE RA     VR FPHERGNW T+ ++P      F+ + +  V+  R                                               V+ +    + H+SLS++V LR H I PFVQ+L+E + S   F   + +   V  N +KTR+F+ L V  G   +L+L+ +VD +M  F    +Y+DP  H+S+A  +GD+
Sbjct:   34 PTARARLPVPECVLAMFREQEE----EERGAEDRAKHGGRVRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR---------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRFFC-VANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYKDPSFHISLAWCVGDL 217
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BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: W2QD81_PHYPN (U6 snRNA phosphodiesterase n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QD81_PHYPN)

HSP 1 Score: 99.0 bits (245), Expect = 7.150e-20
Identity = 84/253 (33.20%), Postives = 122/253 (48.22%), Query Frame = 1 
Query:   49 MDHLREAYASSDEGEIEENVPTAPALGELPPELLSMFSDSEYDLATERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGD 807
            M+ +  AY SS E   +       A      E+    +  +  + T+R+R+++R    QW R FPH  GNWP++  I VP            V+D  R LAR   ER      I G+        + +      LG  EP     N +      HLSLS+   L  ++I  FV +L+ A+K  + F  ++     VLVND+KTRSFL LRV  G Q   Q++  V+  + RF+   YY+DP+ HVS+AS LG+
Sbjct:    1 MESIVAAYGSSPESSDDA------ASSSTDSEVECAHAGEDAHVGTKRKRSDER----QWKRAFPHVDGNWPSHVRIDVP------------VSDELRELARYAIERA---QDIVGE--------AVSLVPFEELGLSEPSTEANNTL------HLSLSRPFVLTYNQINGFVDSLRAALKWQQRFNVTLRRAL-VLVNDEKTRSFLALRVDEGEQQFTQVLRCVNQCLSRFELPTYYKDPIPHVSIASSLGE 213
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BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A6A4AHD6_9STRA (U6 snRNA phosphodiesterase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AHD6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.940e-19
Identity = 70/201 (34.83%), Postives = 106/201 (52.74%), Query Frame = 1 
Query:  205 QRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGD 807
            +R+ + QW R FP+  GNWP++  I +P +     +A+ ++        RA +E  G    +   +  R G  SS+R  +  L                   HLSLS+   L   +IE FV +L+ A+K  + F+ ++  G  VLVNDD+TRSFL LRV  G Q + Q++  VD  + RF+   YYEDP+ HVS+AS +G+
Sbjct:   50 KRSVEPQWKRAFPNVDGNWPSHVRIDIPVTEGLREIAKCAID-------RA-QELMGDIVTLVPFEELRLGE-SSSRHSDNGL-------------------HLSLSRPFVLTFDQIEGFVDSLRSALKWRQRFSVTL-QGALVLVNDDRTRSFLSLRVSEGEQQLKQVLRCVDQCLARFELPTYYEDPIPHVSIASSMGE 221
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BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Match: A0A6P8QU68_GEOSA (U6 snRNA phosphodiesterase n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8QU68_GEOSA)

HSP 1 Score: 97.8 bits (242), Expect = 3.190e-19
Identity = 84/300 (28.00%), Postives = 127/300 (42.33%), Query Frame = 1 
Query:  133 LPPELLSMFSDSEYDLATERRRAEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRLARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDPSGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVNDDKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASVLGDVSSYVNSSAQGGPKGSGQAGGKSQRKVIDSEGRHAVDKSNIEEKGVALEALEALL--PVRAVACKAGTTLFEAPL 1026
            +P  +L+MF DS+     E    +  A     +R FPHERGNW TY ++P   S  F  + +  +   R                                    + G      + +  M+   + H+SLS+TV LR H I PFVQ+L++ + S   F   +V    V  N +KTR+FL L V  G   ILQLI +VD ++  F    +Y++P  H+S+A  +GD+S  +N                         GR   D   ++E     E    LL  P++ + CKAG  ++  PL
Sbjct:   60 VPDSVLNMFQDSK-----EEHHCDDSARHGGRMRNFPHERGNWATYVYMPYETSEEFFDLLDLLLTHTR------------------------------------TYG------LSLVRME---EFHISLSQTVVLRHHWINPFVQSLRDRLLSVHRFFC-VVDEVKVYTNQEKTRTFLGLAVSSGHMQILQLISEVDRVLEEFNLQTFYKNPSFHISLAWCIGDLSDKLN-------------------------GRCLQD---LQEMVNRFEDASVLLRCPMQQICCKAGNKIYSFPL 280
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9126.17203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRL4_ECTSI2.900e-10366.28U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus si... [more]
A0A6H5K6W9_9PHAE3.240e-9561.65U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp... [more]
A0A4D9D6D2_9STRA9.300e-2535.96U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochlorops... [more]
G4YH94_PHYSP3.790e-2232.31U6 snRNA phosphodiesterase n=1 Tax=Phytophthora so... [more]
A0A836CMF3_9STRA4.780e-2251.52U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema min... [more]
A0A5D6XW39_9STRA1.580e-2033.68U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brass... [more]
A0A6J3DQK9_AYTFU6.640e-2030.34U6 snRNA phosphodiesterase n=14 Tax=Anseriformes T... [more]
W2QD81_PHYPN7.150e-2033.20U6 snRNA phosphodiesterase n=6 Tax=Phytophthora pa... [more]
A0A6A4AHD6_9STRA1.940e-1934.83U6 snRNA phosphodiesterase n=4 Tax=Phytophthora Ta... [more]
A0A6P8QU68_GEOSA3.190e-1928.00U6 snRNA phosphodiesterase n=2 Tax=Geotrypetes ser... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9126contigS-dermatodea_contig9126:519..4954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.4
Seed ortholog evalue2.5e-85
Seed eggNOG ortholog2880.D7FRL4
Preferred nameUSB1
GOsGO:0000175,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0008408,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0030097,GO:0030099,GO:0030154,GO:0030223,GO:0030851,GO:0031123,GO:0031323,GO:0032501,GO:0032502,GO:0034470,GO:0034472,GO:0034477,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043628,GO:0044237,GO:0044238,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045171,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1990838
EggNOG free text desc.U6 snRNA 3'-end processing
EggNOG OGsKOG3102@1,KOG3102@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionU6 snRNA phosphodiesterase Usb1
Ec32 orthologEc-12_002600.1
Exons6
Model size1395
Cds size993
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9126.17203.1prot_S-dermatodea_contig9126.17203.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9126 567..4600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925388.6581235-UTR-S-dermatodea_contig9126:518..5661622925388.6581235-UTR-S-dermatodea_contig9126:518..566Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9126 519..566 +
1694079900.1457334-UTR-S-dermatodea_contig9126:518..5661694079900.1457334-UTR-S-dermatodea_contig9126:518..566Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9126 519..566 +
1622925388.7465994-UTR-S-dermatodea_contig9126:4600..49541622925388.7465994-UTR-S-dermatodea_contig9126:4600..4954Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9126 4601..4954 +
1694079900.2296274-UTR-S-dermatodea_contig9126:4600..49541694079900.2296274-UTR-S-dermatodea_contig9126:4600..4954Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9126 4601..4954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925388.6758146-CDS-S-dermatodea_contig9126:566..6871622925388.6758146-CDS-S-dermatodea_contig9126:566..687Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 567..687 +
1694079900.166968-CDS-S-dermatodea_contig9126:566..6871694079900.166968-CDS-S-dermatodea_contig9126:566..687Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 567..687 +
1622925388.6867154-CDS-S-dermatodea_contig9126:2486..26001622925388.6867154-CDS-S-dermatodea_contig9126:2486..2600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 2487..2600 +
1694079900.1803746-CDS-S-dermatodea_contig9126:2486..26001694079900.1803746-CDS-S-dermatodea_contig9126:2486..2600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 2487..2600 +
1622925388.698318-CDS-S-dermatodea_contig9126:2770..29221622925388.698318-CDS-S-dermatodea_contig9126:2770..2922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 2771..2922 +
1694079900.1906235-CDS-S-dermatodea_contig9126:2770..29221694079900.1906235-CDS-S-dermatodea_contig9126:2770..2922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 2771..2922 +
1622925388.713799-CDS-S-dermatodea_contig9126:3297..34641622925388.713799-CDS-S-dermatodea_contig9126:3297..3464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 3298..3464 +
1694079900.1998842-CDS-S-dermatodea_contig9126:3297..34641694079900.1998842-CDS-S-dermatodea_contig9126:3297..3464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 3298..3464 +
1622925388.7237768-CDS-S-dermatodea_contig9126:3730..38931622925388.7237768-CDS-S-dermatodea_contig9126:3730..3893Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 3731..3893 +
1694079900.2087815-CDS-S-dermatodea_contig9126:3730..38931694079900.2087815-CDS-S-dermatodea_contig9126:3730..3893Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 3731..3893 +
1622925388.7346008-CDS-S-dermatodea_contig9126:4324..46001622925388.7346008-CDS-S-dermatodea_contig9126:4324..4600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 4325..4600 +
1694079900.2204795-CDS-S-dermatodea_contig9126:4324..46001694079900.2204795-CDS-S-dermatodea_contig9126:4324..4600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9126 4325..4600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9126.17203.1

>prot_S-dermatodea_contig9126.17203.1 ID=prot_S-dermatodea_contig9126.17203.1|Name=mRNA_S-dermatodea_contig9126.17203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=331bp
MDHLREAYASSDEGEIEENVPTAPALGELPPELLSMFSDSEYDLATERRR
AEQRAGDSQWVRRFPHERGNWPTYAFIPVPNSAAFVSVAEASVADFRRRL
ARAWEERHGSKTAIAGKKRSRNGHPSSNRKGEPSLGKHEPPEVVVNDMDP
SGQQHLSLSKTVTLRAHEIEPFVQALQEAVKSSRCFTASIVSGYDVLVND
DKTRSFLCLRVRGGRQLILQLIGKVDTLMPRFKQSKYYEDPVVHVSVASV
LGDVSSYVNSSAQGGPKGSGQAGGKSQRKVIDSEGRHAVDKSNIEEKGVA
LEALEALLPVRAVACKAGTTLFEAPLLPDH*
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mRNA from alignment at S-dermatodea_contig9126:519..4954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9126.17203.1 ID=mRNA_S-dermatodea_contig9126.17203.1|Name=mRNA_S-dermatodea_contig9126.17203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4436bp|location=Sequence derived from alignment at S-dermatodea_contig9126:519..4954+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATTGGTGCGCGAGGCAGGCCAGGCGATAAGTTCGGGCGTACAGGAGCAT
GGACCATCTCCGGGAAGCATATGCCAGCTCCGACGAAGGCGAAATCGAAG
AAAACGTCCCCACGGCTCCCGCATTAGGCGAGCTTCCGCCGGAGCTCCTG
AGCATGTTCTCTGATAGCGGTACGTACACAACAGACACGTAAACCGCGAG
GCGAAAGCGTTACGACTGCGTCCTTGCGCGGCTTGCTGGTGTCGGTGCTG
CTTTTCTCTCCATGCGATGGCTGCTGGACGTTGTGTGCTGTAAATGGGTT
CCGTTGGCATCGTACATTGTACACAGACATATTTTCAGGAGCTATCATAC
ATATCATACATGTTTTCTTGGCACTATTGCACGATGTTCAAACTTCGAGC
CTGTTCCCGACCCCCGCGAACCCGAATCCCACACCAGCCAGACACATCGT
CAGTTGATTGATTGTGTTGAGATGTTGAGATTGATTGATTGATTGGTTTC
ACACATACAGCCGACCGGCCCGCCATTTTGCAATCGCAATAGTGGATGCC
GATCCCGCTCATGGTCACATGAAGCCGCAAGAGCAAGCGGAATCCAGCAC
CCCTATCATACACCTAGCGAAAACCAGAAACGTGATACATACCAGCACGC
CGCCCGGGTCGCCTGACCCCGTGATTCGCAGGAAAACCATAATAGTAATG
ATAGTAATGTGCTATTGATACAAGCACGAGCTACTTGTACAGAATTTCTG
TCTGACGTGCTGCCTGTCATCAATATACTGTTTCATATATACGATAGGCA
GGTAAATGCCAAGCTACAGAAACTTACTGTCTGAAGTGCTGCTCGCACCG
CCATTGCCACAGAAACACAGCAGCATCCATTATCAGATGCCCAGAAGATA
TCCCACCACGACAAGGCTACGAAATACTGAGAAGAACCGAAGAGCATCCT
CCCGACGATCAGCCCGGGCAGCACCCCTTGCAGCATGACAACAGGATTAT
GCATCGCTTACCCACGCAGAGCGCTCTCGGCAGAGGCAACCGTAAACGCA
AGGCCGAATTCGCGGGCAATAATCGCCTCTCTACAAAACTCATTATGACG
TCAAACTTGCGTAAATAAACTACTGGTACTTTCCAAGAAAAACGATAAAA
GAAGCTCCGCCCCTTGCCTTCCGACGTCGGCCTTGGTCATGTACAAGTAT
ACAGTTATAACAGTACCTGTCAGCAGTGATTGCAATTGAACGTGTACGTA
CAACACAGAGTGCCGGTACTCTAGTCTACAGCAGTAGAATCGTGTGTGTG
CAGTGTTTGTATGCCAAGGTATACCAGTATGTACAGTATGTAATACTTCT
GAGCTACAGCAGTATTAATAGTCACCTCTGACTTATTCGTGCATTTACTT
ATAATACCAAAAACTGTTGTTTGTAACACTGGAGAAGAGCATCACCCGGC
GTCCGTCTACTGAAGGACCCGTGTTTTGACCCCGATTTTGCCCTAGGGTC
AAGTAATAATCGTCACTGCATTTATTAAGTCAGCGCCGCCACCGACCGCT
GTGAAAGGCGGTATTGATCACGGTTGTTCTTCGCTCTACCCTCGAGGTCT
ACAACTGAAGTATTATACTGCTGTGGTATATGTGCACTGCACTACTGTCA
GAGGCGTGATCTTCCGTGTTCACTTCCTTAAAAAACGACGAGGAAGGCAC
ACGACGGACCGCGGATTATCCTTTACTCACTTGTCCAATCTTAACCACTC
AACAACAACTCGGCTCAGTTCGAAGATTGAAGATTAACAAACTGGGGCTG
ACTTGCAAAGTGGTTACATGAACAATTCATAAACTGAAATACTCTCAACC
TACCGTGACTCGCTCGACTCCCCCGCTGGCTCCGAGCGCGAGTGCCGAGC
TTACCACCGTGTGTGGTTCGCTCACACACATCATACCCGCCCATCCCTGA
TGTTGTTGGCTTGTTCAGAGTACGACCTCGCCACCGAGCGACGACGAGCA
GAGCAACGAGCAGGCGACAGCCAGTGGGTTCGACGATTTCCGCACGAGAG
AGGCAACTGGCCGACCTACGCCTTCATTCCCGGTGTGAAGACGCGCTTAC
GAGCCATGTCGGCGGATAACTTGATGTTCTTCGCTTACTGTGAAGCGACA
TGCCGGTACTGTACCTAGGGCTCCCTCGCAAATCCTAGGTTTCTCTTCAA
TTCGACGCAAAACCCTCACGCCTTGTGCTCTGCCCTGCCGTGGCGCCTGC
AGTGCCGAACTCAGCCGCTTTCGTCAGCGTCGCGGAGGCGAGCGTGGCGG
ACTTTCGGCGAAGGCTGGCGAGGGCATGGGAAGAGCGCCACGGCTCGAAA
ACGGCGATAGCGGGCAAGAAGCGCTCGAGGAATGGTCACCCTTCTTCCAA
CCGAGTGAGCGGAGGGCGACTAGATTACAACGCCGATGGCCATTAGCGTT
GCAGGATATAGCTCTCTGCCTAGAGTGCACCAGTAGATTTTGACGGTGGA
AGCTGGTGGAGCGTTTACGTTGGTCCGGCGTGCCCTGTCCTTGTCCGCTT
GTGTTGTTCCGATTCTGTGCACTTGCGGTACCCAATTTGCACAACACATT
GCACACTACACTGTCTGTGGGAATCCAATGGGAAACCGTTTTGCGCCGCG
CTGCCTACCGCAGGGCCTGCCATGAATGGCGGGCTCTCTACAGATTGTGC
TGACGCGTTTTCATTACCCTGGTCTTGCGCTTGCGAATGCCGACAAATGC
TGACCCATCCGCGGTGCTTCTCTGTGCAGAAAGGTGAACCCTCACTTGGG
AAGCATGAACCCCCGGAGGTTGTGGTGAACGACATGGACCCATCCGGCCA
GCAGCACCTTAGCTTGTCCAAGACAGTAACCCTTCGAGCTCACGAGATCG
AGCCGTTCGTGCAGGCCCTCCAGGAGGCCGTCAAGTCTTCGCGGTGGTGA
GAAAATGTGTGCATTTGTCGTTGTAGCATTGATCGTGTGGACTGGCTCAA
CACGCTCCTCCCTTTCGAAAATGCGGTGTTCGCACATATATGAAATCTAT
CCATGGTTGTATGAGTAGCGATTAAGAGTGGATCTTCCTTCAGGCGATGC
GGCGCTTCCAGGTTGACGAAACCACAGCGGCTCAGACAAGCTTTCCTCTA
CATTAGTGGCATGCTCTGCAAACGTTCAGTTTCCCTTGCCGTGCTGTCCG
CCCTTGGGTCAGTTTTACGGCATCTATCGTGAGCGGGTACGACGTGCTCG
TCAACGACGACAAGACACGCTCCTTCCTGTGCCTCAGGGTGAGGGGTGGA
CGACAACTCATCCTGCAGCTTATCGGCAAAGTGGACACATTGATGCCAAG
GTTCAAGCAGTCCAAGTACTACGAGGTAACACTTTTCACACGACGGAACG
ACGTAACAGCTCTTCGAGGGGGTTAACTCGGGGACAATGGGCGAAATGTG
TAGGGTTTCTCTGAAATATTCATGTGCACGCGTTCGTAGGTGCTGTCTGA
TCGCGAGCCACACGGGTGATGTGTGTACGGTATCCCTCCTGCCCAACAGG
GCGGTGAATGTTCACGCCCACGTCTGAATTCAGTGAGTTCTGTGTACGCA
CGCATGGAAAGGCACTGCCTTCTTTGCAGACCACACGGCCGACTGACCCC
TTTCGATTGAAGAGGCTTACGGACACTGAGACGGCCGCAAAATCATGCCC
GCAAGGCGAATCGCAACCTATCACCGCCTGTCCTTGTATCTATGGGTCAA
GGTTGTCGCTTACCATGTCGCCCGATCGCGTTACCATTGTTCCGCGACCG
ACGCAGGATCCCGTTGTGCACGTGAGCGTAGCATCAGTACTCGGAGATGT
AAGCAGCTACGTAAACTCCTCGGCACAGGGAGGGCCAAAAGGGTCAGGGC
AGGCGGGGGGGAAATCTCAGCGAAAGGTTATAGATAGCGAGGGCAGGCAC
GCGGTTGATAAGAGCAACATCGAAGAGAAGGGCGTGGCTTTGGAGGCTTT
AGAGGCGTTGCTGCCTGTTCGCGCTGTGGCGTGCAAGGCAGGGACGACGT
TGTTCGAAGCGCCGCTACTTCCAGATCATTGACTCGATGAAAGCAACGCG
ACCACAAGCGATGGAGTGTAGATACAGTTTCCCTGCGCTCCTTCATGCAT
TGCACCGGCACATTCGTTGGCAGGCGTGTTGTGTTTTTTGCGGTGAGACG
TCGCTGCACACACGCGGGCATCCGTTATTGCAGCGACGTCCGTGTCGCGT
TTTAGATCTAGCATATTGTATGTATGCATGGAGGTATGCATAGAGCTAGA
GTAATAGATTACGTTCAGCATGAATGTTGAAAATGTAAAGCGCTGAATAT
TCGACGAGGGTATCCATCACTGGTATCCATATTCCTCTGTTGGGGCTCAG
GCTCGGTTCGCATCTACAGTATACGAAGTATGAAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9126:519..4954+

>mRNA_S-dermatodea_contig9126.17203.1 ID=mRNA_S-dermatodea_contig9126.17203.1|Name=mRNA_S-dermatodea_contig9126.17203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at S-dermatodea_contig9126:519..4954+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACCATCTCCGGGAAGCATATGCCAGCTCCGACGAAGGCGAAATCGA
AGAAAACGTCCCCACGGCTCCCGCATTAGGCGAGCTTCCGCCGGAGCTCC
TGAGCATGTTCTCTGATAGCGATGGACCATCTCCGGGAAGCATATGCCAG
CTCCGACGAAGGCGAAATCGAAGAAAACGTCCCCACGGCTCCCGCATTAG
GCGAGCTTCCGCCGGAGCTCCTGAGCATGTTCTCTGATAGCGAGTACGAC
CTCGCCACCGAGCGACGACGAGCAGAGCAACGAGCAGGCGACAGCCAGTG
GGTTCGACGATTTCCGCACGAGAGAGGCAACTGGCCGACCTACGCCTTCA
TTCCCGAGTACGACCTCGCCACCGAGCGACGACGAGCAGAGCAACGAGCA
GGCGACAGCCAGTGGGTTCGACGATTTCCGCACGAGAGAGGCAACTGGCC
GACCTACGCCTTCATTCCCGTGCCGAACTCAGCCGCTTTCGTCAGCGTCG
CGGAGGCGAGCGTGGCGGACTTTCGGCGAAGGCTGGCGAGGGCATGGGAA
GAGCGCCACGGCTCGAAAACGGCGATAGCGGGCAAGAAGCGCTCGAGGAA
TGGTCACCCTTCTTCCAACCGATGCCGAACTCAGCCGCTTTCGTCAGCGT
CGCGGAGGCGAGCGTGGCGGACTTTCGGCGAAGGCTGGCGAGGGCATGGG
AAGAGCGCCACGGCTCGAAAACGGCGATAGCGGGCAAGAAGCGCTCGAGG
AATGGTCACCCTTCTTCCAACCGAAAAGGTGAACCCTCACTTGGGAAGCA
TGAACCCCCGGAGGTTGTGGTGAACGACATGGACCCATCCGGCCAGCAGC
ACCTTAGCTTGTCCAAGACAGTAACCCTTCGAGCTCACGAGATCGAGCCG
TTCGTGCAGGCCCTCCAGGAGGCCGTCAAGTCTTCGCGGTGAAAGGTGAA
CCCTCACTTGGGAAGCATGAACCCCCGGAGGTTGTGGTGAACGACATGGA
CCCATCCGGCCAGCAGCACCTTAGCTTGTCCAAGACAGTAACCCTTCGAG
CTCACGAGATCGAGCCGTTCGTGCAGGCCCTCCAGGAGGCCGTCAAGTCT
TCGCGGTGTTTTACGGCATCTATCGTGAGCGGGTACGACGTGCTCGTCAA
CGACGACAAGACACGCTCCTTCCTGTGCCTCAGGGTGAGGGGTGGACGAC
AACTCATCCTGCAGCTTATCGGCAAAGTGGACACATTGATGCCAAGGTTC
AAGCAGTCCAAGTACTACGAGTTTTACGGCATCTATCGTGAGCGGGTACG
ACGTGCTCGTCAACGACGACAAGACACGCTCCTTCCTGTGCCTCAGGGTG
AGGGGTGGACGACAACTCATCCTGCAGCTTATCGGCAAAGTGGACACATT
GATGCCAAGGTTCAAGCAGTCCAAGTACTACGAGGATCCCGTTGTGCACG
TGAGCGTAGCATCAGTACTCGGAGATGTAAGCAGCTACGTAAACTCCTCG
GCACAGGGAGGGCCAAAAGGGTCAGGGCAGGCGGGGGGGAAATCTCAGCG
AAAGGTTATAGATAGCGAGGGCAGGCACGCGGTTGATAAGAGCAACATCG
AAGAGAAGGGCGTGGCTTTGGAGGCTTTAGAGGCGTTGCTGCCTGTTCGC
GCTGTGGCGTGCAAGGCAGGGACGACGTTGTTCGAAGCGCCGCTACTTCC
AGATCATTGAGATCCCGTTGTGCACGTGAGCGTAGCATCAGTACTCGGAG
ATGTAAGCAGCTACGTAAACTCCTCGGCACAGGGAGGGCCAAAAGGGTCA
GGGCAGGCGGGGGGGAAATCTCAGCGAAAGGTTATAGATAGCGAGGGCAG
GCACGCGGTTGATAAGAGCAACATCGAAGAGAAGGGCGTGGCTTTGGAGG
CTTTAGAGGCGTTGCTGCCTGTTCGCGCTGTGGCGTGCAAGGCAGGGACG
ACGTTGTTCGAAGCGCCGCTACTTCCAGATCATTGA
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