prot_S-dermatodea_contig90928.17171.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig90928.17171.1
Unique Nameprot_S-dermatodea_contig90928.17171.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length121
Homology
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BLAST of mRNA_S-dermatodea_contig90928.17171.1 vs. uniprot
Match: A0A6H5JH27_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH27_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.210e-5
Identity = 41/108 (37.96%), Postives = 55/108 (50.93%), Query Frame = 0 
Query:    1 KQNLLGEKKLEQDDVLRVLRTRFGILKA-NGAKGK--GEIDQAFTATQANSGGAKGGNRGSRKKRQPANTWQGG-----GAEKPADYSDYVCHGCQKKGHLIMECPER 100
            KQ LL EK LE++++LRVLRTR G LK  NG+KGK  G +  AF A             GSR++R+     +G       +E  A+     CH C    H   ECP++
Sbjct:  279 KQQLLSEKILEEEEMLRVLRTRAGYLKKDNGSKGKVDGRVQHAFVAV----------GEGSRRRRRSRKKNRGDEQACVASEGAAEKKSVRCHICSAN-HYAHECPQQ 375
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BLAST of mRNA_S-dermatodea_contig90928.17171.1 vs. uniprot
Match: A0A6H5KFW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.550e-5
Identity = 44/113 (38.94%), Postives = 56/113 (49.56%), Query Frame = 0 
Query:    1 KQNLLGEKKLEQDDVLRVLRTRFGILKA-NGAKGK--GEIDQAFTATQANSGGAKGGNRGSRKKR----------QPANTWQGGGAEKPADYSDYVCHGCQKKGHLIMECPER 100
            KQ LL E+ LE++++LRVLRTR G LK  NG+KGK  G +  AF A             GSR+KR          Q      GG AEK + +    CH C    H   ECP++
Sbjct:  287 KQQLLSERILEEEEMLRVLRTRVGYLKKDNGSKGKVDGRVQHAFVAV----------GEGSRRKRRSRKENGGDEQACIASDGGAAEKKSVH----CHICTAN-HYAHECPQQ 384
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90928.17171.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH27_9PHAE1.210e-537.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KFW3_9PHAE1.550e-538.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 101..117
e-value: 0.69
score: 12.2
coord: 83..99
e-value: 0.046
score: 19.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 102..117
score: 9.405
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 84..99
score: 8.548
NoneNo IPR availableGENE3D4.10.60.10coord: 74..118
e-value: 7.8E-8
score: 34.0
IPR025829Zinc knuckle CX2CX3GHX4CPFAMPF13696zf-CCHC_2coord: 81..99
e-value: 6.9E-7
score: 29.0
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 77..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90928contigS-dermatodea_contig90928:212..574 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90928.17171.1mRNA_S-dermatodea_contig90928.17171.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig90928 212..575 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig90928.17171.1 ID=prot_S-dermatodea_contig90928.17171.1|Name=mRNA_S-dermatodea_contig90928.17171.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
KQNLLGEKKLEQDDVLRVLRTRFGILKANGAKGKGEIDQAFTATQANSGG
AKGGNRGSRKKRQPANTWQGGGAEKPADYSDYVCHGCQKKGHLIMECPER
YCQRCGTKGHHSKHCPKIENA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR025829Zn_knuckle_CX2CX3GHX4C
IPR036875Znf_CCHC_sf