mRNA_S-dermatodea_contig90928.17171.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig90928.17171.1
Unique NamemRNA_S-dermatodea_contig90928.17171.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig90928.17171.1 vs. uniprot
Match: A0A6H5JH27_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH27_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.210e-5
Identity = 41/108 (37.96%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:    1 KQNLLGEKKLEQDDVLRVLRTRFGILKA-NGAKGK--GEIDQAFTATQANSGGAKGGNRGSRKKRQPANTWQGG-----GAEKPADYSDYVCHGCQKKGHLIMECPER 300
            KQ LL EK LE++++LRVLRTR G LK  NG+KGK  G +  AF A             GSR++R+     +G       +E  A+     CH C    H   ECP++
Sbjct:  279 KQQLLSEKILEEEEMLRVLRTRAGYLKKDNGSKGKVDGRVQHAFVAV----------GEGSRRRRRSRKKNRGDEQACVASEGAAEKKSVRCHICSAN-HYAHECPQQ 375
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BLAST of mRNA_S-dermatodea_contig90928.17171.1 vs. uniprot
Match: A0A6H5KFW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.550e-5
Identity = 44/113 (38.94%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:    1 KQNLLGEKKLEQDDVLRVLRTRFGILKA-NGAKGK--GEIDQAFTATQANSGGAKGGNRGSRKKR----------QPANTWQGGGAEKPADYSDYVCHGCQKKGHLIMECPER 300
            KQ LL E+ LE++++LRVLRTR G LK  NG+KGK  G +  AF A             GSR+KR          Q      GG AEK + +    CH C    H   ECP++
Sbjct:  287 KQQLLSERILEEEEMLRVLRTRVGYLKKDNGSKGKVDGRVQHAFVAV----------GEGSRRKRRSRKENGGDEQACIASDGGAAEKKSVH----CHICTAN-HYAHECPQQ 384
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90928.17171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH27_9PHAE1.210e-537.96DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KFW3_9PHAE1.550e-538.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90928contigS-dermatodea_contig90928:212..575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_006030.2
Exons1
Model size365
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925385.72282-CDS-S-dermatodea_contig90928:211..5741622925385.72282-CDS-S-dermatodea_contig90928:211..574Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90928 212..574 +
1694079898.1484509-CDS-S-dermatodea_contig90928:211..5741694079898.1484509-CDS-S-dermatodea_contig90928:211..574Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90928 212..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90928.17171.1prot_S-dermatodea_contig90928.17171.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig90928 212..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig90928.17171.1

>prot_S-dermatodea_contig90928.17171.1 ID=prot_S-dermatodea_contig90928.17171.1|Name=mRNA_S-dermatodea_contig90928.17171.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
KQNLLGEKKLEQDDVLRVLRTRFGILKANGAKGKGEIDQAFTATQANSGG
AKGGNRGSRKKRQPANTWQGGGAEKPADYSDYVCHGCQKKGHLIMECPER
YCQRCGTKGHHSKHCPKIENA
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mRNA from alignment at S-dermatodea_contig90928:212..575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig90928.17171.1 ID=mRNA_S-dermatodea_contig90928.17171.1|Name=mRNA_S-dermatodea_contig90928.17171.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=364bp|location=Sequence derived from alignment at S-dermatodea_contig90928:212..575+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCAGAATTTGCTCGGTGAGAAGAAGCTGGAGCAGGATGACGTTTTGAG
AGTTTTACGGACAAGGTTTGGGATTTTGAAGGCTAACGGGGCGAAGGGCA
AGGGGGAAATCGACCAGGCGTTCACCGCAACCCAGGCCAATTCTGGCGGG
GCAAAGGGGGGCAATCGTGGATCGCGGAAGAAGCGGCAGCCGGCCAATAC
TTGGCAAGGCGGTGGAGCCGAGAAACCCGCGGATTACTCCGACTACGTGT
GCCACGGATGCCAGAAGAAGGGTCATTTGATCATGGAATGCCCTGAGCGA
TACTGCCAAAGATGCGGCACCAAGGGGCACCACTCCAAGCACTGCCCCAA
GATCGAGAACGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig90928:212..575+

>mRNA_S-dermatodea_contig90928.17171.1 ID=mRNA_S-dermatodea_contig90928.17171.1|Name=mRNA_S-dermatodea_contig90928.17171.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig90928:212..575+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCAGAATTTGCTCGGTGAGAAGAAGCTGGAGCAGGATGACGTTTTGAG
AGTTTTACGGACAAGGTTTGGGATTTTGAAGGCTAACGGGGCGAAGGGCA
AGGGGGAAATCGACCAGGCGTTCACCGCAACCCAGGCCAATTCTGGCGGG
GCAAAGGGGGGCAATCGTGGATCGCGGAAGAAGCGGCAGCCGGCCAATAC
TTGGCAAGGCGGTGGAGCCGAGAAACCCGCGGATTACTCCGACTACGTGT
GCCACGGATGCCAGAAGAAGGGTCATTTGATCATGGAATGCCCTGAGCGA
TACTGCCAAAGATGCGGCACCAAGGGGCACCACTCCAAGCACTGCCCCAA
GATCGAGAACGCGAAGCAGAATTTGCTCGGTGAGAAGAAGCTGGAGCAGG
ATGACGTTTTGAGAGTTTTACGGACAAGGTTTGGGATTTTGAAGGCTAAC
GGGGCGAAGGGCAAGGGGGAAATCGACCAGGCGTTCACCGCAACCCAGGC
CAATTCTGGCGGGGCAAAGGGGGGCAATCGTGGATCGCGGAAGAAGCGGC
AGCCGGCCAATACTTGGCAAGGCGGTGGAGCCGAGAAACCCGCGGATTAC
TCCGACTACGTGTGCCACGGATGCCAGAAGAAGGGTCATTTGATCATGGA
ATGCCCTGAGCGATACTGCCAAAGATGCGGCACCAAGGGGCACCACTCCA
AGCACTGCCCCAAGATCGAGAACGCG
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