prot_S-dermatodea_contig9087.17166.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9087.17166.1
Unique Nameprot_S-dermatodea_contig9087.17166.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length271
Homology
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BLAST of mRNA_S-dermatodea_contig9087.17166.1 vs. uniprot
Match: A0A6H5JHZ8_9PHAE (RING-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ8_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.090e-70
Identity = 120/229 (52.40%), Postives = 155/229 (67.69%), Query Frame = 0 
Query:    2 PGMTTIGRSSETRIRSQFVSRKHVEILVEMNSCKVRHCGKKHSEVKINGSPVKQDWVEFPVGARLELSANVLQSFPYMLEPYNKR----AFSAISERPAAVDVAQYQDFTGRFNCPICTDLYVDPTELDCK--HLFCHTCIFGVLSQAGCNNKCPSCQTKINHKRKSTIIANSGNKRARTDT---ANK-YQSQAVGLVKDTIQWMIERRMCDYGDESEWRKRSGLEPLP 220
            PG   IGRS  T I+SQ VSRKH+E+ VE + CKVR+C K  SEVKI+ + VK++WV FPVG RLE   N +++FPY LE Y+      A +  S   AAV   Q+Q+ T R  CP+C DL+VDP ELDCK  HL+CH+CI+ ++    C NKCP+C T I+   +  I+  +G KR  +     ANK YQSQAVGLV++ I+W+IE+RM  Y DE+EWRKRSGLEPLP
Sbjct:   22 PGTKFIGRSVATGIQSQVVSRKHIEVAVEGDVCKVRYCAKFKSEVKIDNALVKKEWVPFPVGGRLEFLENPVEAFPYRLERYSTASSATAAAEASGNTAAVACDQHQEITTRLACPMCYDLFVDPIELDCKGKHLYCHSCIYDLVKNESCQNKCPTCMTSISSSTRKKILQ-AGRKRGASGMPVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLP 249
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BLAST of mRNA_S-dermatodea_contig9087.17166.1 vs. uniprot
Match: D7FQD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD6_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.560e-31
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 0 
Query:  114 ICTDLYVDPTELDCK--HLFCHTCIFGVLSQAGCNNKCPSCQTKINHKRKSTIIANSGNKRARTDT---ANK-YQSQAVGLVKDTIQWMIERRMCDYGDESEWRKRSGLEPLP 220
            +C DL+VDP ELDCK  HL+CH+CI+ ++    C NKCP C T I+   +  I+  +G KR  +     ANK YQSQAVGLV++ I+W+IE+RM  Y DE+EWRKRSGLEPLP
Sbjct:    1 MCYDLFVDPIELDCKGKHLYCHSCIYDLVKNGSCQNKCPICMTSISSSTRKKILQ-AGRKRGASGMPVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLP 112
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BLAST of mRNA_S-dermatodea_contig9087.17166.1 vs. uniprot
Match: A0A2G8LAX0_STIJA (RING-type domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LAX0_STIJA)

HSP 1 Score: 52.4 bits (124), Expect = 7.470e-5
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 0 
Query:  110 FNCPICTDLYVDPTELDCKHLFCHTCIFGVLSQAGCNNKCPSCQTKINHKRK 161
            FNCPIC DL++ PT++ C H+FC  C+   L  A  + KCP C+ + + K K
Sbjct:   11 FNCPICLDLFLKPTQVSCGHVFCEPCLQPYLPLA--SPKCPLCRAEFDPKMK 60
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9087.17166.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHZ8_9PHAE1.090e-7052.40RING-type domain-containing protein (Fragment) n=1... [more]
D7FQD6_ECTSI1.560e-3154.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2G8LAX0_STIJA7.470e-544.23RING-type domain-containing protein n=1 Tax=Sticho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 112..152
e-value: 1.5E-5
score: 34.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 112..153
score: 11.914
IPR041388PNK, FHA domainPFAMPF17913FHA_2coord: 5..78
e-value: 2.0E-5
score: 24.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 98..190
e-value: 1.8E-15
score: 58.5
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 112..152
e-value: 5.1E-8
score: 32.7
NoneNo IPR availableGENE3D2.60.200.20coord: 1..81
e-value: 1.7E-8
score: 36.1
NoneNo IPR availablePANTHERPTHR16079:SF4E3 UBIQUITIN-PROTEIN LIGASE CHFRcoord: 5..167
NoneNo IPR availablePANTHERPTHR16079UBIQUITIN LIGASE PROTEIN CHFRcoord: 5..167
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 105..158
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 127..136
IPR008984SMAD/FHA domain superfamilySUPERFAMILY49879SMAD/FHA domaincoord: 4..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9087contigS-dermatodea_contig9087:3160..6368 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9087.17166.1mRNA_S-dermatodea_contig9087.17166.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9087 3147..7526 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9087.17166.1 ID=prot_S-dermatodea_contig9087.17166.1|Name=mRNA_S-dermatodea_contig9087.17166.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=271bp
MPGMTTIGRSSETRIRSQFVSRKHVEILVEMNSCKVRHCGKKHSEVKING
SPVKQDWVEFPVGARLELSANVLQSFPYMLEPYNKRAFSAISERPAAVDV
AQYQDFTGRFNCPICTDLYVDPTELDCKHLFCHTCIFGVLSQAGCNNKCP
SCQTKINHKRKSTIIANSGNKRARTDTANKYQSQAVGLVKDTIQWMIERR
MCDYGDESEWRKRSGLEPLPKVPQPEASATPAGGGGGGGGSRSPIPLPGE
RQGVSDEASGEVISLLSDDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR041388FHA_2
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR008984SMAD_FHA_dom_sf