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Homology
BLAST of mRNA_S-dermatodea_contig9087.17166.1 vs. uniprot
Match: A0A6H5JHZ8_9PHAE (RING-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ8_9PHAE) HSP 1 Score: 229 bits (583), Expect = 1.590e-66 Identity = 122/233 (52.36%), Postives = 157/233 (67.38%), Query Frame = 2
Query: 5 VKLMPGMTTIGRSSETRIRSQFVSRKHVEILVEMNSCKVRHCGKKHSEVKINGSPVKQDWVEFPVGARLELSANVLQSFPYMLEPYNKR----AFSAISERPAAVDVAQYQDFTGRFNCPICTDLYVDPTELDCK--HLFCHTCIFGVLSQAGCNNKCPSCQTKINHKRKSTIIANSGNKRARTDT---ANK-YQSQAVGLVKDTIQWMIERRMCDYGDESEWRKRSGLEPLP 673
V L PG IGRS T I+SQ VSRKH+E+ VE + CKVR+C K SEVKI+ + VK++WV FPVG RLE N +++FPY LE Y+ A + S AAV Q+Q+ T R CP+C DL+VDP ELDCK HL+CH+CI+ ++ C NKCP+C T I+ + I+ +G KR + ANK YQSQAVGLV++ I+W+IE+RM Y DE+EWRKRSGLEPLP
Sbjct: 18 VLLPPGTKFIGRSVATGIQSQVVSRKHIEVAVEGDVCKVRYCAKFKSEVKIDNALVKKEWVPFPVGGRLEFLENPVEAFPYRLERYSTASSATAAAEASGNTAAVACDQHQEITTRLACPMCYDLFVDPIELDCKGKHLYCHSCIYDLVKNESCQNKCPTCMTSISSSTRKKILQ-AGRKRGASGMPVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLP 249
BLAST of mRNA_S-dermatodea_contig9087.17166.1 vs. uniprot
Match: D7FQD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD6_ECTSI) HSP 1 Score: 125 bits (313), Expect = 3.900e-29 Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 2
Query: 353 ICTDLYVDPTELDCK--HLFCHTCIFGVLSQAGCNNKCPSCQTKINHKRKSTIIANSGNKRARTDT---ANK-YQSQAVGLVKDTIQWMIERRMCDYGDESEWRKRSGLEPLP 673
+C DL+VDP ELDCK HL+CH+CI+ ++ C NKCP C T I+ + I+ +G KR + ANK YQSQAVGLV++ I+W+IE+RM Y DE+EWRKRSGLEPLP
Sbjct: 1 MCYDLFVDPIELDCKGKHLYCHSCIYDLVKNGSCQNKCPICMTSISSSTRKKILQ-AGRKRGASGMPVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLP 112
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Zinc finger, RING/FYVE/PHD-type |
| Ec32 ortholog | Ec-01_006510.1 |
| Exons | 5 |
| Model size | 1984 |
| Cds size | 813 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9087.17166.1 >prot_S-dermatodea_contig9087.17166.1 ID=prot_S-dermatodea_contig9087.17166.1|Name=mRNA_S-dermatodea_contig9087.17166.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=271bp
MPGMTTIGRSSETRIRSQFVSRKHVEILVEMNSCKVRHCGKKHSEVKING
SPVKQDWVEFPVGARLELSANVLQSFPYMLEPYNKRAFSAISERPAAVDV
AQYQDFTGRFNCPICTDLYVDPTELDCKHLFCHTCIFGVLSQAGCNNKCP
SCQTKINHKRKSTIIANSGNKRARTDTANKYQSQAVGLVKDTIQWMIERR
MCDYGDESEWRKRSGLEPLPKVPQPEASATPAGGGGGGGGSRSPIPLPGE
RQGVSDEASGEVISLLSDDD* back to topmRNA from alignment at S-dermatodea_contig9087:3147..7526+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig9087.17166.1 ID=mRNA_S-dermatodea_contig9087.17166.1|Name=mRNA_S-dermatodea_contig9087.17166.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4380bp|location=Sequence derived from alignment at S-dermatodea_contig9087:3147..7526+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCAGTTAAGCTCATGCCAGGGATGACAACCATCGGGAGGAGCTCCGAAA
CGAGGATCAGAAGCCAATTTGTGTCCCGGAAGCATGTCGAGATTCTCGTA
GGTGAGTGACACCCTCATTGGCAGCCAACAGAAGGAGGGCCCATCCTGTC
TCCAACCCGGTTTGAAGTGCGTGTTTCCCTCTCTGCGAATAACGTATGTA
ATTCTCTCAGGAAGCAGAGCCATGGAGCTACCCGCGACGCAAATCAGTGG
CGAGGCCGCGAACTTTTGTTTTTGGGGGGCTGAGGCAATGGGAGCTTGGT
TGATTTTTGGCCCTGTGTGTGTGTTTTTTAAGTCAGTTGGTGTGAGACTG
TCATCGTCATGACTTTCATGGCGCAATCATGTGCTACACACAGGGCAACT
GTTACGTGGCTCTTTTTGGAGTTTCCGTCCTTTGCGAACGCACTCGTGCG
TACTGCGATAGCTGTGCTCGCTTATAATTATGGCGCCTCGTCTTTTTTCT
CTTACTGCATTCCACATATTGATTTGGGTGCGCTACTGGTGGTCGCCGCG
AAGGAATTCTCGCGAATGTGATACAAGTTCGCGCGGTTTTGGCCTTTTTT
GCCCCCGCTCTTCTTTGTTTTTTACAGAGATGAACAGCTGCAAAGTGCGG
CACTGCGGTAAGAAACACAGCGAGGTGAAGATCAACGGCAGTCCAGTGAA
GCAGGACTGGGTGGAGTTTCCCGTCGGGGCCCGCCTGGAACTTTCAGCAA
ACGTTTTGCAGGTGAACACATCTTCGCGAACTTATACGAGTCCCTCTTGT
GCCGCCGTATGCCGACGGGTGCCCTTGCCATCCCGGTTTATATAGACTAA
GTGGGTAGCCACGGCTACGCCCGTGAGGTGCGCGTTGGCAGGCGATCTAT
ATGTGGGTTTGGAAAATTACGCCACTACTACTCTGTCAAGGACTACTCTA
AAACCTACTGTCAAACAGTGTATAGGTATTAGAGACTATAATCTCCTCCA
CATATCGGCCTCAAATTTTTGCATCAAGGCTCCACTCTAAATTAGAAACA
AACAAACGTGGCAACGCGCTATTAAGTAATGAAGATACGTAAATATTCAT
CATACCATGGCGGTGTCGCGGACCTCTGCGACTATGTACGTGTGACCGGA
TGGTTCTGATGAAAGTGGTTGTAGTGGTCAGAGAGAAGGCCAACCTTGAA
CAGCGGACTTGTTCCCTCGTGCAAAAGACCTCCCTGTCTTTGACATCCGT
CGTTGAAAGGCGTCAAGCACAAACGCCAGGTGACGCAAGTTATTCCAGAA
CGGAAGGAGAGCGATGTTCAAGACGAGTTTTTCTTTCATCGTCGACGAGA
GTAGCTCGATTTTCTGAACGCTGGAACGCCGCCGATATTTTTATCGTTGT
TGTTGTATCTGTCGATCCCCTCGACTGCCTCGTCCGACAGTCGTTCCCGT
ACATGCTGGAGCCCTACAACAAGAGGGCTTTTAGTGCGATCTCCGAGCGC
CCGGCCGCCGTCGACGTGGCTCAATACCAAGATTTTACTGGACGGTTCAA
CTGCCCCATATGCACGGTAAGCCTTTGGACGTTAGACGGACCCCTTGCGC
AATCGCCGCGGCTGTCGCATGCACCACCATAGCGTCGCGACAGCTCTCAC
CTCAAGATGGGGGGTGGGAAAGCCTTCATTGACAGTCCAGGCCAAGCCCA
TCATGCTTCGTGCAAGGAAAACGTACGTGTCAGCAGGACGCTATTATAGA
TTGCCGCACCGACTGTGCCCTCCTGAAGCGTTGCGTTGATGGAAACACAA
AACGCTGGGAGGGATGCGCGTCCGTTTTCACGTACCGTGTGCGTTTGTGA
CGGATCTGCCGCCTTTCTTGTTCGACCAACAACGTTTGACCCGCAGGACC
TCTACGTCGACCCAACGGAGTTGGACTGCAAGCACCTGTTCTGCCATACG
TGCATCTTCGGCGTGTTGAGCCAGGCAGGGTGCAACAACAAGTGCCCCAG
CTGCCAGACCAAGATCAACCATAAGCGCAAGTCGACTATTATTGCCAACA
GGTGCGGTGTACAAGCACAGCGCGTGGATGGCGCCATTTTAGTTGTGTCG
TGATGTACACGTCACTGATTTATCTCTGAGGGCAGCTTCTAGAGCAACAT
ACCAACTGGATGCTCCTGCGTGCTGGCCTTGTCCCAAGGCCTGCCTTATA
TTTTATCGCACAAGCCGAATCCTGACGGGCGCGGAGGGGGGGGGGGGGGG
GTTCCTTCTTTCTTTCATGGAAAGACAGGGAGCGGGGTGAGGAAACCAAA
AACCAACAAAAAATTATGAAGTGAAGGAGAGTTGTTAATCCGAAGCGCGA
AAATAAAACACAAGCAGGAGCGGGAGNNNNNNNNNNTGGTTGCGGTGTTT
TTTTCTCCAGCTTGTTTTTTTTTCTTGCGCGCGACGGCGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGTTCCTTCTTTCTGTCATGGAAAG
CACGAGAGCGGCGTGAGTAAACCGAAACCCGACGAAGATCTATGAGCTGA
AGGAGAGTGCTGAATCCGATGCGCGACAATGAATCCAAGGCAGGAGCCGG
AGAGAGATATGGGAATAGCCTTCGGTCTTGAAAGGTTACAAATTGATGTT
GGAAAATAACAAAACTTGTACAAGTACTTGTATTCGAAATCAGGGGTGCG
TCCGTCGACGCTTGGATTCCCGCGTCGTCCTCGTTGGCCCGTCCGCTTCG
ACCAAATGGGTCGTCGAGTTTTTCGCTGACGATTCCGGCCACACCCGTTC
TCGTGAATTGGCAAATATACTGGCACATCACCAGTAAGTTTACACCAAAC
GCCTTTTCATGCTCTTCCACCCACACCCCTATGTTTCGCACGCCCGCTCT
GGACTTTCTCAGCGGTAACAAGAGAGCACGAACCGACACCGCGAACAAGT
ACCAGTCGCAGGCCGTGGGGCTGGTAAAGGACACCATCCAATGGATGATC
GAGCGACGGATGTGCGACTACGGCGACGAAAGCGAGTGGCGAAAGCGTTC
CGGCCTCGAGCCACTGCCGAAGGTTCCTCAGCCGGAAGCCTCCGCCACAC
CAGCAGGAGGAGGAGGTGGTGGAGGCGGGTCAAGGTCTCCCATTCCGCTC
CCAGGAGAGAGGCAGGGAGTTTCGGACGAGGCCTCCGGCGAGGTGATCAG
CCTCTTGTCGGACGACGACTAGATAGGGAGACTTACGTCTGTGACATCTC
TCCACGGCGGTTGCGGCCGGGGGGGATTCGGGACAAGTAAATGGCGACTG
GAATGGGCGCAGTGGCACAGATGTGGACGCATGTATAGTTGTAGGCATAT
TTGTTTTCGCTGTTTCCATGTTTTGATTTTCTAGTGGACGCTTATAATAT
TATAGTACTTCTGTGCCCCTTTTTGTGTGCTCGGTAGCTGCTTGAAGTGG
TGCGGCATCCAAGCTGGGTGACTTCCCTGTGGGCAAGTCGTTGTGTCGTC
GTTGATGATTGTACCTTGTCCCCACGTCGTCGCAACGTTTACATTGCTCT
GGAAGCAAGGGTGAATTCACGATAAGATTTTTTCTATATATGATGCAGTA
AATGTAGTGTGGGGTAGACCGTTGTGGGTCTCAAATTCAAATAAGATCGA
GCTGCAGCATGTGTTGCAACCTGCTCCAATCGGAGGTCCTGAAAATAGCT
GCCGTCCACGCTCCACAGTCAATCAGCTCTGGTGCGTTGCTTCCTGCCGG
AAACCCGAGAAATTTGTGCGATTTTCGACCGACTCCCCTGTGCCCACCTG
GAAACGCTTCGCAAAGAATTCCGGATTTCATTATTATAATTTCAAGACAC
TGAATTACGAGCCGCAGGTCAGCTTGCACTCGAAGTATTAATTGTACAAG
CACGAAACCCGCGTGCGATAAGAAACCTGCTCGTGGGCGAGATTTCCTTA
GAAGTGGAGGCTTTAGTCATCAACATCGCGCCAGGTGCGTCATGCTGAAG
TCGTCGCTCTTTGGATTAGGACACTCCGGCAGGTCCAGTTTTGATCGGAT
GGGCATGCAGAGGCTGCGAGACGAGTAGGGTAGAAAAGCGCCCGAATTCC
ATTAATGTCAATAGTTCAACCGGTGATCAATGCACAGAGACTTTTTGCCC
GTGAGGCGTGGTAAGGAGCCCCCCAAGTACGTAGGCTGACATACGAGGGT
GGGCATACCTTTTTCTCGCATCCAATGTCTGGACAGCCGAAGCACATTCG
TTCCGTATCTGGTGCTGTGGAGGTCGGTTATTGCTGTCGCCCGGGATAGC
AGCTGGAACGCCGGGATGTACCCCCTCTCCCACTTTTTGTCACGAACCGT
TGCTAACGGGAATTAATTGCTCGTTCTCCG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig9087:3147..7526+ >mRNA_S-dermatodea_contig9087.17166.1 ID=mRNA_S-dermatodea_contig9087.17166.1|Name=mRNA_S-dermatodea_contig9087.17166.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at S-dermatodea_contig9087:3147..7526+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCAGGGATGACAACCATCGGGAGGAGCTCCGAAACGAGGATCAGAAG
CCAATTTGTGTCCCGGAAGCATGTCGAGATTCTCGTAGATGCCAGGGATG
ACAACCATCGGGAGGAGCTCCGAAACGAGGATCAGAAGCCAATTTGTGTC
CCGGAAGCATGTCGAGATTCTCGTAGAGATGAACAGCTGCAAAGTGCGGC
ACTGCGGTAAGAAACACAGCGAGGTGAAGATCAACGGCAGTCCAGTGAAG
CAGGACTGGGTGGAGTTTCCCGTCGGGGCCCGCCTGGAACTTTCAGCAAA
CGTTTTGCAGAGATGAACAGCTGCAAAGTGCGGCACTGCGGTAAGAAACA
CAGCGAGGTGAAGATCAACGGCAGTCCAGTGAAGCAGGACTGGGTGGAGT
TTCCCGTCGGGGCCCGCCTGGAACTTTCAGCAAACGTTTTGCAGTCGTTC
CCGTACATGCTGGAGCCCTACAACAAGAGGGCTTTTAGTGCGATCTCCGA
GCGCCCGGCCGCCGTCGACGTGGCTCAATACCAAGATTTTACTGGACGGT
TCAACTGCCCCATATGCACGTCGTTCCCGTACATGCTGGAGCCCTACAAC
AAGAGGGCTTTTAGTGCGATCTCCGAGCGCCCGGCCGCCGTCGACGTGGC
TCAATACCAAGATTTTACTGGACGGTTCAACTGCCCCATATGCACGGACC
TCTACGTCGACCCAACGGAGTTGGACTGCAAGCACCTGTTCTGCCATACG
TGCATCTTCGGCGTGTTGAGCCAGGCAGGGTGCAACAACAAGTGCCCCAG
CTGCCAGACCAAGATCAACCATAAGCGCAAGTCGACTATTATTGCCAACA
GGACCTCTACGTCGACCCAACGGAGTTGGACTGCAAGCACCTGTTCTGCC
ATACGTGCATCTTCGGCGTGTTGAGCCAGGCAGGGTGCAACAACAAGTGC
CCCAGCTGCCAGACCAAGATCAACCATAAGCGCAAGTCGACTATTATTGC
CAACAGCGGTAACAAGAGAGCACGAACCGACACCGCGAACAAGTACCAGT
CGCAGGCCGTGGGGCTGGTAAAGGACACCATCCAATGGATGATCGAGCGA
CGGATGTGCGACTACGGCGACGAAAGCGAGTGGCGAAAGCGTTCCGGCCT
CGAGCCACTGCCGAAGGTTCCTCAGCCGGAAGCCTCCGCCACACCAGCAG
GAGGAGGAGGTGGTGGAGGCGGGTCAAGGTCTCCCATTCCGCTCCCAGGA
GAGAGGCAGGGAGTTTCGGACGAGGCCTCCGGCGAGGTGATCAGCCTCTT
GTCGGACGACGACTAGCGGTAACAAGAGAGCACGAACCGACACCGCGAAC
AAGTACCAGTCGCAGGCCGTGGGGCTGGTAAAGGACACCATCCAATGGAT
GATCGAGCGACGGATGTGCGACTACGGCGACGAAAGCGAGTGGCGAAAGC
GTTCCGGCCTCGAGCCACTGCCGAAGGTTCCTCAGCCGGAAGCCTCCGCC
ACACCAGCAGGAGGAGGAGGTGGTGGAGGCGGGTCAAGGTCTCCCATTCC
GCTCCCAGGAGAGAGGCAGGGAGTTTCGGACGAGGCCTCCGGCGAGGTGA
TCAGCCTCTTGTCGGACGACGACTAG back to top
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