prot_S-dermatodea_contig9027.17109.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9027.17109.1
Unique Nameprot_S-dermatodea_contig9027.17109.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length133
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9027.17109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 78..125
e-value: 4.0E-11
score: 42.9
coord: 8..52
e-value: 1.0E-9
score: 38.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 0.0017
score: 16.4
coord: 81..114
e-value: 2.3E-6
score: 25.4
coord: 47..80
e-value: 3.4E-8
score: 31.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 9.81
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 12.266
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..113
score: 11.619
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..131
e-value: 2.2E-39
score: 137.6
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9027contigS-dermatodea_contig9027:1787..4357 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9027.17109.1mRNA_S-dermatodea_contig9027.17109.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9027 1787..4375 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9027.17109.1 ID=prot_S-dermatodea_contig9027.17109.1|Name=mRNA_S-dermatodea_contig9027.17109.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MEAEKITPDKVTFNTVIAACEAGADHWTAFSLFNQMQDAGLMPDLWTYNS
LASVLGSCGEWERAVELLDDMRGRGLTPDVVTYSALVSACEKAGQVEASL
KLVDEMAREGVDANERTFSAAIKAVSSAAPFSS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf