mRNA_S-dermatodea_contig9027.17109.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9027.17109.1
Unique NamemRNA_S-dermatodea_contig9027.17109.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9027.17109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9027contigS-dermatodea_contig9027:1787..4375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9027.17109.1prot_S-dermatodea_contig9027.17109.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9027 1787..4357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.8547144-CDS-S-dermatodea_contig9027:1786..19001622925380.8547144-CDS-S-dermatodea_contig9027:1786..1900Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9027 1787..1900 -
1694079894.7627914-CDS-S-dermatodea_contig9027:1786..19001694079894.7627914-CDS-S-dermatodea_contig9027:1786..1900Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9027 1787..1900 -
1622925380.8669603-CDS-S-dermatodea_contig9027:3317..35101622925380.8669603-CDS-S-dermatodea_contig9027:3317..3510Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9027 3318..3510 -
1694079894.7713215-CDS-S-dermatodea_contig9027:3317..35101694079894.7713215-CDS-S-dermatodea_contig9027:3317..3510Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9027 3318..3510 -
1622925380.8767028-CDS-S-dermatodea_contig9027:4265..43571622925380.8767028-CDS-S-dermatodea_contig9027:4265..4357Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9027 4266..4357 -
1694079894.7797828-CDS-S-dermatodea_contig9027:4265..43571694079894.7797828-CDS-S-dermatodea_contig9027:4265..4357Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9027 4266..4357 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.8863602-UTR-S-dermatodea_contig9027:4357..43751622925380.8863602-UTR-S-dermatodea_contig9027:4357..4375Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9027 4358..4375 -
1694079894.7894669-UTR-S-dermatodea_contig9027:4357..43751694079894.7894669-UTR-S-dermatodea_contig9027:4357..4375Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9027 4358..4375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9027.17109.1

>prot_S-dermatodea_contig9027.17109.1 ID=prot_S-dermatodea_contig9027.17109.1|Name=mRNA_S-dermatodea_contig9027.17109.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MEAEKITPDKVTFNTVIAACEAGADHWTAFSLFNQMQDAGLMPDLWTYNS
LASVLGSCGEWERAVELLDDMRGRGLTPDVVTYSALVSACEKAGQVEASL
KLVDEMAREGVDANERTFSAAIKAVSSAAPFSS
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mRNA from alignment at S-dermatodea_contig9027:1787..4375-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9027.17109.1 ID=mRNA_S-dermatodea_contig9027.17109.1|Name=mRNA_S-dermatodea_contig9027.17109.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2589bp|location=Sequence derived from alignment at S-dermatodea_contig9027:1787..4375- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGGTTTGCTAGAGGCCATGGAGGCGGAGAAGATAACGCCGGACAAGGT
AACCTTCAACACCGTCATAGCCGCTTGCGAGGCGGGGGCAGACCATTGGA
CCGCTTTCAGGTACGTGTTGTGGCCATCGGCGATTGATCGACCCTGTGGG
GTCAATGCTCCATCCTCCCGAGGGCGCGTGGATAATGGCCTAGCAGCTAA
AGCTTGCGAAACTTGAGTTACCCCCCGCCTAAAAAAATGAAGATTTCAGA
AACATGTAGCGAGCGTTGGGGTCCCACCTTTTCAAGGGGGAAGATGGTCC
AAGCTACACCTATGGAGGCAGGCTCAGTTGTTACATATGGTGCTTTTGTG
TCTTATCAGGTATGATGTTATATGGCTATGGTATCATATATGACGTGAGT
CTTTGTCCTGAGGTATATCCTGGTGATATATATTTGCTGCGTTTTTATGA
GCCAATTATATTGATTTTTCCTTTCCTACCCCCCCCCCCCCCCTCCCCCC
CCCCCACACACACATTTCAGAATGACAAAAATTGCGGTACTTGAAGCATG
GCCACGCCTACTGAACGTGCAACATTTATTATAGTTGCCCGGTGTGTTCA
ATCAACCCATGGTATATCGGTTGGCGTCGCAAACGCAAGGGCGATGGATA
AGATAGCAGCTGGTATCACCCTTGTGAAACGCAGCCTGGCCCGCGGAAAC
CCGGCATATACATGTTACATGTACGTACTGTACCTCGACATGTGGGTATC
TTTTTCGAGGTTCCCGGAAATGTCAGAACAGGTTCCTTCAACGTGCCACT
CACTCGCAACCCATGTATATGTTAACGTCTCCCCCGCTGTTTATGTGTCT
CCGCCGAATCGCCAGTCTGTTCAACCAGATGCAGGACGCCGGGTTGATGC
CTGATCTGTGGACGTACAACTCGCTTGCCAGCGTGCTTGGCAGCTGTGGG
GAGTGGGAGAGGGCCGTGGAGCTGCTGGATGACATGAGAGGGAGGGGCCT
TACCCCCGATGTAGTGACGTACTCGGCGCTCGTTAGCGCTTGTGAAAAGG
CCGGTCAGGTGGGATGTCTATACGGTCGATTTGTTGTGATTGATTGATTC
ATTGATTGGTTGAGTGCTAAATTGATTGATTCGAGGGGTTGATTGAGGAT
TCCTATTTTTCAGTTTGTTTGTGCCGTCCCTTTAACTCTAACAATACCAC
GCCGGGCACATATTTATTTTATCAGCAGATGCTTCTTTCCCCCACGACTC
CGACCCGACACACTGATTGATTGCCCCCGGCCGCGCATGTAGAGCAATTC
ATCAACACACAACCAGCAGCTGAGCACCGGCGCAACACAAAACAACCACC
GCCCGCCTGTCCTTCATTATTGATCGGTCGATCGATTGATTGGTTGATTT
CCTGATTGATGATTAATTCATTGATTCGTTTATTAATTGATTGGTTGATT
TACTGATTGATGATTAATTCATTGATTCGTTTATTAATTGATTGGTTGAT
TTACTGATTGATGATTAATTCATTGATTCGTTTATTAATTGATTGGTTGA
TTTACTGATTGATGATTAATTCATTGATCGGTCGATCGATTGATTGGTTG
ATTTCCTGATTGATGATTATTTCATTGATTCGTTTATTAATTGATTGGTT
GATTTACTGATTGATGATTAATTCATTGATTCGTTTATTAATTGAGCGAT
ACATTGATTGAAGCGGTGGATTGACTGTTTCATTACTGGATTGATGGGTT
CGTGGTGATTGCTTGATTGCTTGGTATGAACAGATACTGCTGTCGTACGC
CCTGGACAGCATTTCTCGTAGCAGGTAGAGGCGAACCTTGAGCGGGTGTG
ATAGTCAACTAAACTAATGAACCAATCAATCGATCAATCAATCAATCAAT
CAATCAATCAACCGATCGTATGCCCTGGACAACACATATAGTCAAAGGTG
GAGGCAAGCCTTAAGCTAGTGGACGAGACGGCCAGCCCTAAGCTGGTGTG
ATAAATGATGCATCAATCAATCGATCAATCAATCAACCAACCAATCGTAT
GCCCTGGACAGCACATATAGTCACAGGTGGAAGCAAGCCTTTACCTAGTG
GACGACATGGCCAGCCCTAAGCTGGTGTGATAAATTATATTTCAATCAGC
TAACCAATCAATCAACCAATCAATCAATTTATAATGCAATAAGTCAAACA
GTTGTGAATTAAGTCAATCAACCAATCAATCGATTGTTAATTCAATCAGT
ACATCAACCAATCAACCAGTTTGTCGCACGCCCTGCACAACACCTCTCTT
GGCAGGTGGAGGCAGGCAAGCCTTAAGCTAGTGGACGAGATGGCTAGCCC
TAAGCTGGTATGATAAATGATCAATCAAATCAATCAATCAACCACTCAAT
CGATTGTTAATTCAATCAATACATTAACCAATCAACCAATCAGTCGCATG
CCCTGCACACCACCTCTCTTGGCAGGTGGAGGCAAGCCTTAAGCTAGTGG
ACGAGATGGCCCGAGAAGGGGTGGACGCGAACGAGAGAACTTTCAGCGCC
GCGATAAAGGCAGTATCGTCTGCAGCACCGTTCTCCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9027:1787..4375-

>mRNA_S-dermatodea_contig9027.17109.1 ID=mRNA_S-dermatodea_contig9027.17109.1|Name=mRNA_S-dermatodea_contig9027.17109.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig9027:1787..4375- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGCGGAGAAGATAACGCCGGACAAGGTAACCTTCAACACCGTCAT
AGCCGCTTGCGAGGCGGGGGCAGACCATTGGACCGCTTTCAGATGGAGGC
GGAGAAGATAACGCCGGACAAGGTAACCTTCAACACCGTCATAGCCGCTT
GCGAGGCGGGGGCAGACCATTGGACCGCTTTCAGTCTGTTCAACCAGATG
CAGGACGCCGGGTTGATGCCTGATCTGTGGACGTACAACTCGCTTGCCAG
CGTGCTTGGCAGCTGTGGGGAGTGGGAGAGGGCCGTGGAGCTGCTGGATG
ACATGAGAGGGAGGGGCCTTACCCCCGATGTAGTGACGTACTCGGCGCTC
GTTAGCGCTTGTGAAAAGGCCGGTCAGTCTGTTCAACCAGATGCAGGACG
CCGGGTTGATGCCTGATCTGTGGACGTACAACTCGCTTGCCAGCGTGCTT
GGCAGCTGTGGGGAGTGGGAGAGGGCCGTGGAGCTGCTGGATGACATGAG
AGGGAGGGGCCTTACCCCCGATGTAGTGACGTACTCGGCGCTCGTTAGCG
CTTGTGAAAAGGCCGGTCAGGTGGAGGCAAGCCTTAAGCTAGTGGACGAG
ATGGCCCGAGAAGGGGTGGACGCGAACGAGAGAACTTTCAGCGCCGCGAT
AAAGGCAGTATCGTCTGCAGCACCGTTCTCCTCCGTGGAGGCAAGCCTTA
AGCTAGTGGACGAGATGGCCCGAGAAGGGGTGGACGCGAACGAGAGAACT
TTCAGCGCCGCGATAAAGGCAGTATCGTCTGCAGCACCGTTCTCCTCC
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