prot_S-dermatodea_contig8965.17049.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8965.17049.1
Unique Nameprot_S-dermatodea_contig8965.17049.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length264
Homology
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BLAST of mRNA_S-dermatodea_contig8965.17049.1 vs. uniprot
Match: D7FIN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIN9_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 7.080e-75
Identity = 167/278 (60.07%), Postives = 191/278 (68.71%), Query Frame = 0 
Query:    1 RQRAWTVRGGQGXXXXXXXXXXXXEKGTHEDADLTDRTAPAPGEQPRYTQAPIEKMASDLRAKRDDIXXXXXXXXXXXXXXXXXXXXXXXXXVLRDRSPEAFGELGGHAS-YDSATAGMDVANRRSFFLGIRRVVLLVQVVELMVACLWQVAFPYGGVAGFVGAGS---------ETSATSSEKSWV----WDARGKLGLAVAASVGQAALYTSMLVFFGCDRVVLRAVRVTGWEHGAAAAWTLFRAY-GALGKLSHLAACAWLAGMAFSCAYFGRQL 263
            RQ AWTVRGG                G++    +     P  GE      + I+K+A+DLRA RD  XXXXXXXXXXXXXXXXXXXX     VLR+RSPEAFGELGGHAS YDSATAGMDVANRRSFFLGIRRV+LLVQVVEL+ AC+WQ AFP+GG+AGF+ A S          T+   + +  V     D RG LGLA+AA + Q ++YT +LV+FGCDRVVLR VRVT WEHGAAA W L R   G  GKL+HL ACAWLAGMAF CAYFGRQL
Sbjct:    4 RQSAWTVRGGY----KHGSSATASNSGSNSSNSVGQDGFPPRGET-TAVDSNIDKLAADLRATRDHXXXXXXXXXXXXXXXXXXXXXKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVANRRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITAASTMNGEGGTPNTAVLDTLRDIVAGEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDRVVLRGVRVTAWEHGAAAVWALTRLLTGPGGKLTHLVACAWLAGMAFLCAYFGRQL 276
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8965.17049.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIN9_ECTSI7.080e-7560.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 206..216
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 184..205
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 261..263
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 133..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 240..260
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 235..239
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 217..234
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..132
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 152..183
NoneNo IPR availableTMHMMTMhelixcoord: 184..206
NoneNo IPR availableTMHMMTMhelixcoord: 133..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8965contigS-dermatodea_contig8965:1735..3134 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8965.17049.1mRNA_S-dermatodea_contig8965.17049.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8965 1735..3134 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8965.17049.1 ID=prot_S-dermatodea_contig8965.17049.1|Name=mRNA_S-dermatodea_contig8965.17049.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=264bp
RQRAWTVRGGQGGGSAGGGGGGGGEKGTHEDADLTDRTAPAPGEQPRYTQ
APIEKMASDLRAKRDDIAADVRARTDAIASELKAKREKIADEVLRDRSPE
AFGELGGHASYDSATAGMDVANRRSFFLGIRRVVLLVQVVELMVACLWQV
AFPYGGVAGFVGAGSETSATSSEKSWVWDARGKLGLAVAASVGQAALYTS
MLVFFGCDRVVLRAVRVTGWEHGAAAAWTLFRAYGALGKLSHLAACAWLA
GMAFSCAYFGRQL*
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