mRNA_S-dermatodea_contig8965.17049.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8965.17049.1
Unique NamemRNA_S-dermatodea_contig8965.17049.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8965.17049.1 vs. uniprot
Match: D7FIN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIN9_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 7.080e-75
Identity = 167/278 (60.07%), Postives = 191/278 (68.71%), Query Frame = 1 
Query:    1 RQRAWTVRGGQGXXXXXXXXXXXXEKGTHEDADLTDRTAPAPGEQPRYTQAPIEKMASDLRAKRDDIXXXXXXXXXXXXXXXXXXXXXXXXXVLRDRSPEAFGELGGHAS-YDSATAGMDVANRRSFFLGIRRVVLLVQVVELMVACLWQVAFPYGGVAGFVGAGS---------ETSATSSEKSWV----WDARGKLGLAVAASVGQAALYTSMLVFFGCDRVVLRAVRVTGWEHGAAAAWTLFRAY-GALGKLSHLAACAWLAGMAFSCAYFGRQL 789
            RQ AWTVRGG                G++    +     P  GE      + I+K+A+DLRA RD  XXXXXXXXXXXXXXXXXXXX     VLR+RSPEAFGELGGHAS YDSATAGMDVANRRSFFLGIRRV+LLVQVVEL+ AC+WQ AFP+GG+AGF+ A S          T+   + +  V     D RG LGLA+AA + Q ++YT +LV+FGCDRVVLR VRVT WEHGAAA W L R   G  GKL+HL ACAWLAGMAF CAYFGRQL
Sbjct:    4 RQSAWTVRGGY----KHGSSATASNSGSNSSNSVGQDGFPPRGET-TAVDSNIDKLAADLRATRDHXXXXXXXXXXXXXXXXXXXXXKIVDEVLRERSPEAFGELGGHASSYDSATAGMDVANRRSFFLGIRRVLLLVQVVELLAACMWQAAFPFGGLAGFITAASTMNGEGGTPNTAVLDTLRDIVAGEAGDGRGPLGLALAACLAQFSVYTMLLVWFGCDRVVLRGVRVTAWEHGAAAVWALTRLLTGPGGKLTHLVACAWLAGMAFLCAYFGRQL 276
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8965.17049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIN9_ECTSI7.080e-7560.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8965contigS-dermatodea_contig8965:1735..3134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000470.1
Exons2
Model size792
Cds size792
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925375.486967-CDS-S-dermatodea_contig8965:1734..21781622925375.486967-CDS-S-dermatodea_contig8965:1734..2178Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8965 1735..2178 -
1694079890.818786-CDS-S-dermatodea_contig8965:1734..21781694079890.818786-CDS-S-dermatodea_contig8965:1734..2178Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8965 1735..2178 -
1622925375.4994736-CDS-S-dermatodea_contig8965:2786..31341622925375.4994736-CDS-S-dermatodea_contig8965:2786..3134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8965 2787..3134 -
1694079890.829446-CDS-S-dermatodea_contig8965:2786..31341694079890.829446-CDS-S-dermatodea_contig8965:2786..3134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8965 2787..3134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8965.17049.1prot_S-dermatodea_contig8965.17049.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8965 1735..3134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8965.17049.1

>prot_S-dermatodea_contig8965.17049.1 ID=prot_S-dermatodea_contig8965.17049.1|Name=mRNA_S-dermatodea_contig8965.17049.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=264bp
RQRAWTVRGGQGGGSAGGGGGGGGEKGTHEDADLTDRTAPAPGEQPRYTQ
APIEKMASDLRAKRDDIAADVRARTDAIASELKAKREKIADEVLRDRSPE
AFGELGGHASYDSATAGMDVANRRSFFLGIRRVVLLVQVVELMVACLWQV
AFPYGGVAGFVGAGSETSATSSEKSWVWDARGKLGLAVAASVGQAALYTS
MLVFFGCDRVVLRAVRVTGWEHGAAAAWTLFRAYGALGKLSHLAACAWLA
GMAFSCAYFGRQL*
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mRNA from alignment at S-dermatodea_contig8965:1735..3134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8965.17049.1 ID=mRNA_S-dermatodea_contig8965.17049.1|Name=mRNA_S-dermatodea_contig8965.17049.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1400bp|location=Sequence derived from alignment at S-dermatodea_contig8965:1735..3134- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCAGAGAGCGTGGACGGTTCGCGGCGGCCAGGGTGGTGGAAGCGCAGG
CGGCGGCGGCGGTGGCGGTGGCGAGAAAGGCACTCACGAAGATGCCGATC
TTACAGACCGCACAGCGCCCGCGCCAGGGGAGCAGCCGCGGTATACACAG
GCCCCGATTGAGAAGATGGCCTCTGATCTGCGGGCTAAGAGGGACGACAT
CGCTGCAGATGTTCGCGCGCGTACCGACGCGATCGCGTCGGAACTCAAGG
CGAAGCGGGAAAAGATAGCGGACGAGGTCCTCAGGGATCGTTCGCCGGAG
GCCTTCGGCGAGCTCGGAGGGCATGCCTCGTACGACTCGGCCACGGCGGT
GGGTGGGCGTGTCTTCTGATGCGAGCGCTTATTTGGGGTTGAGCATTGCG
GCACGGAATATCGGCGCCAGCATTTTACCTTCTCCCCACATTCTGCTGCT
GTTGTTCTAAAGTATGCGCTGCGCTTGGTGGTCGGCGGCTACATATGAAA
ACCACGAAACGCTCTTCGTACACGAGTCGCGAGGTGTACGAGTAGAACAC
TTGAAACACCAGCTCTACACTACTTGCAGCAGTCCCACCTTACGGAGAGA
GTGAAGGACGTATACAAGTACAGTACCTACTTTCGGTTTGCCCTGGAACT
ATAATATTAAGAGTGTGCCTGTGAGTTAGGGATGTACGTGTGAGCAGGAT
TTTGTTTTTTAGAAAACACCAACGTTGACGTTGAACCTGACAGTCATGTT
CGGAAAGACATGACGCCGCACAAGATTCCAGACTCCCTGAAATGCGGCCG
GTAAACAGCCGTGCTGGTGTCCCAGCTGGGCTCAGAAGCGTATACAATAT
AACTTAGTACAGTACGAACGTCAACCTCGGCCAACCACCCTTCTTCACCA
TGACCACACCTCGCCCTCCCTCGTCGCTGCGCACTTCTCACGACCTGTTT
CTCCAGGGCATGGACGTGGCGAATCGACGATCGTTCTTCTTAGGAATCCG
GCGCGTGGTACTGCTCGTCCAGGTGGTGGAGCTCATGGTGGCTTGCTTAT
GGCAAGTCGCTTTCCCTTACGGAGGAGTTGCGGGGTTCGTAGGCGCCGGC
TCGGAAACATCGGCGACGAGTTCGGAGAAGAGCTGGGTGTGGGACGCACG
GGGGAAATTGGGGCTCGCCGTGGCGGCGTCAGTAGGACAAGCTGCCTTGT
ACACCTCCATGCTTGTGTTTTTCGGATGCGACAGGGTGGTGCTGAGGGCT
GTGAGGGTGACCGGTTGGGAGCACGGAGCTGCGGCAGCGTGGACACTGTT
CAGGGCCTACGGCGCCTTGGGGAAGCTATCGCACCTCGCCGCCTGCGCGT
GGTTGGCTGGGATGGCCTTCTCGTGCGCTTACTTCGGGCGCCAGTTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8965:1735..3134-

>mRNA_S-dermatodea_contig8965.17049.1 ID=mRNA_S-dermatodea_contig8965.17049.1|Name=mRNA_S-dermatodea_contig8965.17049.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at S-dermatodea_contig8965:1735..3134- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCAGAGAGCGTGGACGGTTCGCGGCGGCCAGGGTGGTGGAAGCGCAGG
CGGCGGCGGCGGTGGCGGTGGCGAGAAAGGCACTCACGAAGATGCCGATC
TTACAGACCGCACAGCGCCCGCGCCAGGGGAGCAGCCGCGGTATACACAG
GCCCCGATTGAGAAGATGGCCTCTGATCTGCGGGCTAAGAGGGACGACAT
CGCTGCAGATGTTCGCGCGCGTACCGACGCGATCGCGTCGGAACTCAAGG
CGAAGCGGGAAAAGATAGCGGACGAGGTCCTCAGGGATCGTTCGCCGGAG
GCCTTCGGCGAGCTCGGAGGGCATGCCTCGTACGACTCGGCCACGGCGAG
GCAGAGAGCGTGGACGGTTCGCGGCGGCCAGGGTGGTGGAAGCGCAGGCG
GCGGCGGCGGTGGCGGTGGCGAGAAAGGCACTCACGAAGATGCCGATCTT
ACAGACCGCACAGCGCCCGCGCCAGGGGAGCAGCCGCGGTATACACAGGC
CCCGATTGAGAAGATGGCCTCTGATCTGCGGGCTAAGAGGGACGACATCG
CTGCAGATGTTCGCGCGCGTACCGACGCGATCGCGTCGGAACTCAAGGCG
AAGCGGGAAAAGATAGCGGACGAGGTCCTCAGGGATCGTTCGCCGGAGGC
CTTCGGCGAGCTCGGAGGGCATGCCTCGTACGACTCGGCCACGGCGGGCA
TGGACGTGGCGAATCGACGATCGTTCTTCTTAGGAATCCGGCGCGTGGTA
CTGCTCGTCCAGGTGGTGGAGCTCATGGTGGCTTGCTTATGGCAAGTCGC
TTTCCCTTACGGAGGAGTTGCGGGGTTCGTAGGCGCCGGCTCGGAAACAT
CGGCGACGAGTTCGGAGAAGAGCTGGGTGTGGGACGCACGGGGGAAATTG
GGGCTCGCCGTGGCGGCGTCAGTAGGACAAGCTGCCTTGTACACCTCCAT
GCTTGTGTTTTTCGGATGCGACAGGGTGGTGCTGAGGGCTGTGAGGGTGA
CCGGTTGGGAGCACGGAGCTGCGGCAGCGTGGACACTGTTCAGGGCCTAC
GGCGCCTTGGGGAAGCTATCGCACCTCGCCGCCTGCGCGTGGTTGGCTGG
GATGGCCTTCTCGTGCGCTTACTTCGGGCGCCAGTTGTGAGGCATGGACG
TGGCGAATCGACGATCGTTCTTCTTAGGAATCCGGCGCGTGGTACTGCTC
GTCCAGGTGGTGGAGCTCATGGTGGCTTGCTTATGGCAAGTCGCTTTCCC
TTACGGAGGAGTTGCGGGGTTCGTAGGCGCCGGCTCGGAAACATCGGCGA
CGAGTTCGGAGAAGAGCTGGGTGTGGGACGCACGGGGGAAATTGGGGCTC
GCCGTGGCGGCGTCAGTAGGACAAGCTGCCTTGTACACCTCCATGCTTGT
GTTTTTCGGATGCGACAGGGTGGTGCTGAGGGCTGTGAGGGTGACCGGTT
GGGAGCACGGAGCTGCGGCAGCGTGGACACTGTTCAGGGCCTACGGCGCC
TTGGGGAAGCTATCGCACCTCGCCGCCTGCGCGTGGTTGGCTGGGATGGC
CTTCTCGTGCGCTTACTTCGGGCGCCAGTTGTGA
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